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# CMakeFiles.txt for the MINC2 progs
#
# Andrew Janke - a.janke@gmail.com
#SET(CMAKE_MODULE_PATH "../cmake-modules")
LINK_DIRECTORIES(../)
INCLUDE_DIRECTORIES(Proglib)
LINK_LIBRARIES( minc2 ${NETCDF_LIBRARY} ${HDF5_LIBRARY} )
ADD_DEFINITIONS(-DHAVE_CONFIG_H)
SET(BISON_FIND_REQUIRED)
SET(FLEX_FIND_REQUIRED)
FIND_PACKAGE(BISON)
FIND_PACKAGE(FLEX)
# all the progs
ADD_EXECUTABLE(../invert_raw_image mincview/invert_raw_image.c)
ADD_EXECUTABLE(../mincaverage mincaverage/mincaverage.c)
BISON_TARGET(../minccalc minccalc/gram.y minccalc/gram.c COMPILE_FLAGS "--debug")
FLEX_TARGET(../minccalc minccalc/lex.l minccalc/lex.c)
ADD_EXECUTABLE(../minccalc minccalc/minccalc.c
minccalc/gram.c
minccalc/eval.c
minccalc/ident.c
minccalc/lex.c
minccalc/node.c
minccalc/optim.c
minccalc/scalar.c
minccalc/sym.c
minccalc/vector.c)
ADD_EXECUTABLE(../mincconcat mincconcat/mincconcat.c)
ADD_EXECUTABLE(../mincconvert mincconvert/mincconvert.c)
ADD_EXECUTABLE(../minccopy minccopy/minccopy.c)
ADD_EXECUTABLE(../mincdump mincdump/mincdump.c
mincdump/vardata.c
mincdump/dumplib.c)
ADD_EXECUTABLE(../mincexample1 mincexample/mincexample1.c)
ADD_EXECUTABLE(../mincexample2 mincexample/mincexample2.c)
ADD_EXECUTABLE(../mincexpand mincexpand/mincexpand.c)
ADD_EXECUTABLE(../mincextract mincextract/mincextract.c)
BISON_TARGET(../mincgen mincgen/ncgentab.y mincgen/nccentab.c)
FLEX_TARGET(../mincgen mincgen/ncgenyy.l mincgen/ncgenyy.c)
ADD_EXECUTABLE(../mincgen mincgen/main.c
mincgen/escapes.c
mincgen/genlib.c
mincgen/getfill.c
mincgen/init.c
mincgen/load.c
mincgen/ncgentab.c
mincgen/ncgenyy.c)
ADD_EXECUTABLE(../mincinfo mincinfo/mincinfo.c)
ADD_EXECUTABLE(../minclookup minclookup/minclookup.c)
ADD_EXECUTABLE(../mincmakescalar mincmakescalar/mincmakescalar.c)
ADD_EXECUTABLE(../mincmakevector mincmakevector/mincmakevector.c)
ADD_EXECUTABLE(../mincmath mincmath/mincmath.c)
ADD_EXECUTABLE(../minc_modify_header minc_modify_header/minc_modify_header.c)
ADD_EXECUTABLE(../mincresample mincresample/mincresample.c
mincresample/resample_volumes.c
Proglib/convert_origin_to_start.c)
TARGET_LINK_LIBRARIES(../mincresample volume_io2)
ADD_EXECUTABLE(../mincreshape mincreshape/mincreshape.c
mincreshape/copy_data.c)
ADD_EXECUTABLE(../mincstats mincstats/mincstats.c)
ADD_EXECUTABLE(../minctoraw minctoraw/minctoraw.c)
ADD_EXECUTABLE(../mincwindow mincwindow/mincwindow.c)
ADD_EXECUTABLE(../rawtominc rawtominc/rawtominc.c
Proglib/convert_origin_to_start.c)
ADD_EXECUTABLE(../voxeltoworld coordinates/voxeltoworld.c)
TARGET_LINK_LIBRARIES(../voxeltoworld volume_io2 minc2)
ADD_EXECUTABLE(../worldtovoxel coordinates/worldtovoxel.c)
TARGET_LINK_LIBRARIES(../worldtovoxel volume_io2 minc2)
ADD_EXECUTABLE(../transformtags xfm/transformtags.c)
TARGET_LINK_LIBRARIES(../transformtags volume_io2 minc2)
ADD_EXECUTABLE(../xfmconcat xfm/xfmconcat.c)
TARGET_LINK_LIBRARIES(../xfmconcat volume_io2 minc2)
ADD_EXECUTABLE(../xfminvert xfm/xfminvert.c)
TARGET_LINK_LIBRARIES(../xfminvert volume_io2 minc2)
# install progs
INSTALL(TARGETS
../invert_raw_image
../mincaverage
../minccalc
../mincconcat
../mincconvert
../minccopy
../mincdump
# ../mincexample1
# ../mincexample2
../mincexpand
../mincextract
../mincgen
../mincinfo
../minclookup
../mincmakescalar
../mincmakevector
../mincmath
../minc_modify_header
../mincresample
../mincreshape
../mincstats
../minctoraw
../mincwindow
../rawtominc
../voxeltoworld
../worldtovoxel
../transformtags
../xfmconcat
../xfminvert
DESTINATION bin)
# perl and shell scripts
INSTALL(FILES
mincdiff/mincdiff
mincedit/mincedit
mincheader/mincheader
minchistory/minchistory
mincpik/mincpik
mincview/mincview
DESTINATION bin )
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