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# CMakeFiles.txt for the MINC2 library
#
# Andrew Janke - a.janke@gmail.com
CMAKE_MINIMUM_REQUIRED(VERSION 2.6)
PROJECT(libminc2)
SET(CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake-modules")
#ADD_SUBDIRECTORY( testdir )
#ADD_SUBDIRECTORY( doc )
# Packaging defines
SET(CPACK_GENERATOR TGZ)
SET(CPACK_PACKAGE_VERSION_MAJOR 2)
SET(CPACK_PACKAGE_VERSION_MINOR 0)
SET(CPACK_PACKAGE_VERSION_PATCH 17)
INCLUDE(CPack)
SET(PACKAGE "minc")
SET(PACKAGE_BUGREPORT "a.janke@gmail.com")
SET(PACKAGE_NAME "minc")
SET(PACKAGE_VERSION "${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}")
SET(PACKAGE_STRING "${PACKAGE_NAME} ${PACKAGE_VERSION}")
# yes, build as minc2
SET(MINC2 "1")
ADD_DEFINITIONS(-DHAVE_CONFIG_H)
# aliases
SET(VERSION "${PACKAGE_VERSION}")
# progs needed to build
#SET(FLEX_FIND_REQUIRED)
#SET(BISON_FIND_REQUIRED)
#FIND_PACKAGE(BISON)
#FIND_PACKAGE(FLEX)
# check for prereqs
INCLUDE(CheckFunctionExists)
CHECK_FUNCTION_EXISTS(mkstemp HAVE_MKSTEMP)
CHECK_FUNCTION_EXISTS(strerror HAVE_STRERROR)
INCLUDE(CheckIncludeFiles)
CHECK_INCLUDE_FILES(float.h HAVE_FLOAT_H)
# netcdf and HDF5
SET(NETCDF_FIND_REQUIRED TRUE)
SET(HDF5_FIND_REQUIRED TRUE)
FIND_PACKAGE(HDF5)
FIND_PACKAGE(NETCDF)
INCLUDE_DIRECTORIES( ${NETCDF_INCLUDE_DIR} ${HDF5_INCLUDE_DIR} )
# config files for build
CONFIGURE_FILE(${CMAKE_SOURCE_DIR}/config.h.cmake ${CMAKE_SOURCE_DIR}/config.h)
# others
CONFIGURE_FILE(${CMAKE_SOURCE_DIR}/epm-header.in ${CMAKE_SOURCE_DIR}/epm-header)
# set the master INCLUDE directories
INCLUDE_DIRECTORIES(
${CMAKE_CURRENT_SOURCE_DIR}
${CMAKE_SOURCE_DIR}/libsrc
${CMAKE_SOURCE_DIR}/libsrc2
${CMAKE_SOURCE_DIR}/volume_io/Include
)
# some variables
SET(minc1_LIB_SRCS
libsrc/ParseArgv.c
libsrc/dim_conversion.c
libsrc/image_conversion.c
libsrc/minc_convenience.c
libsrc/minc_error.c
libsrc/nd_loop.c
libsrc/netcdf_convenience.c
libsrc/time_stamp.c
libsrc/value_conversion.c
libsrc/voxel_loop.c
libsrc/hdf_convenience.c
libsrc/minc_compat.c
libsrc/minc_simple.c
)
SET(minc2_LIB_SRCS
libsrc2/convert.c
libsrc2/datatype.c
libsrc2/dimension.c
libsrc2/free.c
libsrc2/grpattr.c
libsrc2/hyper.c
libsrc2/label.c
libsrc2/m2util.c
libsrc2/record.c
libsrc2/slice.c
libsrc2/valid.c
libsrc2/volprops.c
libsrc2/volume.c
)
# build the main minc2 library
ADD_LIBRARY(minc2 STATIC ${minc1_LIB_SRCS} ${minc2_LIB_SRCS})
INSTALL(TARGETS minc2 DESTINATION lib)
INSTALL(FILES libsrc/minc.h libsrc/ParseArgv.h
libsrc/voxel_loop.h
libsrc/nd_loop.h
libsrc/time_stamp.h
libsrc/minc_compat.h
volume_io/Include/volume_io.h
libsrc2/minc2.h
libsrc/minc_simple.h
DESTINATION include
)
SET_TARGET_PROPERTIES(minc2 PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
# volume_io2
SET(volume_io2_LIB_SRCS
volume_io/Geometry/colour.c
volume_io/Geometry/colour_def.c
volume_io/Geometry/gaussian.c
volume_io/Geometry/inverse.c
volume_io/Geometry/newton.c
volume_io/Geometry/points.c
volume_io/Geometry/splines.c
volume_io/Geometry/tensors.c
volume_io/Geometry/transforms.c
volume_io/MNI_formats/gen_xf_io.c
volume_io/MNI_formats/gen_xfs.c
volume_io/MNI_formats/grid_transforms.c
volume_io/MNI_formats/mni_io.c
volume_io/MNI_formats/tag_points.c
volume_io/MNI_formats/thin_plate_spline.c
volume_io/Prog_utils/alloc.c
volume_io/Prog_utils/alloc_check.c
volume_io/Prog_utils/arrays.c
volume_io/Prog_utils/files.c
volume_io/Prog_utils/print.c
volume_io/Prog_utils/progress.c
volume_io/Prog_utils/string.c
volume_io/Prog_utils/time.c
volume_io/Volumes/evaluate.c
volume_io/Volumes/get_hyperslab.c
volume_io/Volumes/input_free.c
volume_io/Volumes/input_mnc.c
volume_io/Volumes/input_volume.c
volume_io/Volumes/multidim_arrays.c
volume_io/Volumes/output_mnc.c
volume_io/Volumes/output_volume.c
volume_io/Volumes/set_hyperslab.c
volume_io/Volumes/volume_cache.c
volume_io/Volumes/volumes.c
)
# build and install volume_io2 library
ADD_LIBRARY(volume_io2 STATIC ${volume_io2_LIB_SRCS})
INSTALL(TARGETS volume_io2 DESTINATION lib)
INSTALL(FILES volume_io/Include/volume_io/alloc.h
volume_io/Include/volume_io/arrays.h
volume_io/Include/volume_io/basic.h
volume_io/Include/volume_io/def_math.h
volume_io/Include/volume_io/files.h
volume_io/Include/volume_io/geom_structs.h
volume_io/Include/volume_io/geometry.h
volume_io/Include/internal_volume_io.h
volume_io/Include/volume_io/multidim.h
volume_io/Include/volume_io/progress.h
volume_io/Include/volume_io/string_funcs.h
volume_io/Include/volume_io/system_dependent.h
volume_io/Include/volume_io/transforms.h
volume_io/Include/volume_io/vol_io_prototypes.h
volume_io/Include/volume_io/volume.h
volume_io/Include/volume_io/volume_cache.h
DESTINATION include/volume_io)
SET_TARGET_PROPERTIES(volume_io2 PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
# now build the progs subdir
ADD_SUBDIRECTORY( progs )
# and then the conversion subdir
ADD_SUBDIRECTORY( conversion )
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