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MindTheGap fill
version : 2.2.3
gatb-core-library : 1.4.2
supported_kmer_sizes : 32 64 96 128
Parameters
Input data
Graph : gold.h5
Breakpoints : gold.breakpoints
Graph
kmer-size : 31
abundance_min (auto inferred) : 7
abundance_min (used) : 7
nb_solid_kmers : 7419
nb_branching_nodes : 36
Assembly options
max_depth : 10000
max_nodes : 100
Results
Breakpoints
nb_input_breakpoints : 8
nb_filled_breakpoints : 8
as_unique_sequence : 8
as_multiple_sequence : 0
Time : 1.0 s
Output files
assembled sequence file : gold.insertions.fasta
insertion variant vcf file : gold.insertions.vcf
assembly statistics file : gold.info.txt
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