File: bubble.fa

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minia 3.2.6-5
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file content (12 lines) | stat: -rw-r--r-- 998 bytes parent folder | download | duplicates (4) 
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>works well for k=21; part of genome10K.fasta
CATCGATGCGAGACGCCTGTCGCGGGGAATTGTGGGGCGGACCACGCTCTGGCTAACGAGCTACCGTTTCCTTTAACCTGCCAGACGGTGACCAGGGCCGTTCGGCGTTGCATCGAGCGGTGTCGCTAGCGCAATGCGCAAGATTTTGACATTTACAAGGCAACATTGCAGCGTCCGATGGTCCGGTGGCCTCCAGATAGTGTCCAGTCGCTCTAACTGTATGGAGACCATAGGCATTTACCTTATTCTCATCGCCACGCCCCAAGATCTTTAGGACCCAGCATTCCTTTAACCACTAACATAACGCGTGTCATCTAGTTCAACAACC
>that's the bubble  (highly covered)
TGTCATCTAGTTCAACAACCAAAATAACGACTCTTGCGCTCGGATGT
>that's the bubble 
TGTCATCTAGTTCAACAACCAAAATAACGACTCTTGCGCTCGGATGT
>that's the bubble 
TGTCATCTAGTTCAACAACCAAAATAACGACTCTTGCGCTCGGATGT
>that's the bubble path 2, low covered
TGTCATCTAGTTCAACAACCAAAAAAACGACTCTTGCGCTCGGATGT
>remaining part
CGACTCTTGCGCTCGGATGTCCGCAATGGGTTATCCCTATGTTCCGGTAATCTCTCATCTACTAAGCGCCCTAAAGGTCGTATGGTTGGAGGGCGGTTACACACCCTTAAGTACCGAACGATAGAGCACCCGTCTAGGAGGGCGTGCAGGGTCTCCCGCTAGCTAATGGTCACGGCCTCTCTGGGAAAGCTGAACAACGGATGATACCCATACTGCCACTCCAGTACCTGGGCCGCGTGTTGTACGCTGTGTATCTTGAGAGCGTTTCCAGCAGATAGAACAGGATCACATGTACAAA