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Source: miniasm
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Sascha Steinbiss <satta@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 12),
zlib1g-dev
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/miniasm
Vcs-Git: https://salsa.debian.org/med-team/miniasm.git
Homepage: https://github.com/lh3/miniasm
Package: miniasm
Architecture: any
Depends: ${misc:Depends},
${shlibs:Depends},
zlib1g
Recommends: minimap
Description: ultrafast de novo assembler for long noisy DNA sequencing reads
Miniasm is an experimental very fast OLC-based de novo assembler for noisy
long reads. It takes all-vs-all read self-mappings (typically by minimap)
as input and outputs an assembly graph in the GFA format. Different from
mainstream assemblers, miniasm does not have a consensus step. It simply
concatenates pieces of read sequences to generate the final unitig sequences.
Thus the per-base error rate is similar to the raw input reads.
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