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Source: minimac4
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Dylan Aïssi <daissi@debian.org>,
Étienne Mollier <emollier@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
cmake,
zlib1g-dev,
libstatgen-dev,
libshrinkwrap-dev,
libsavvy-dev,
libomp-jonathonl-dev,
liblzma-dev,
libzstd-dev,
bcftools <!nocheck>
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/minimac4
Vcs-Git: https://salsa.debian.org/med-team/minimac4.git
Homepage: https://genome.sph.umich.edu/wiki/Minimac4
Rules-Requires-Root: no
Package: minimac4
Architecture: any
Depends: ${misc:Depends},
${shlibs:Depends}
Description: Fast Imputation Based on State Space Reduction HMM
Minimac4 is a lower memory and more computationally efficient implementation
of "minimac2/3". It is an algorithm for genotypic imputation that works on
phased genotypes (say from MaCH).
.
Minimac4 is designed to handle very large reference panels in a more
computationally efficient way with no loss of accuracy. This algorithm
analyzes only the unique sets of haplotypes in small genomic segments, thereby
saving on time\-complexity, computational memory but no loss in degree of
accuracy.
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