File: ref_panel.vcf

package info (click to toggle)
minimac4 4.1.6-2
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 404 kB
  • sloc: cpp: 3,841; sh: 77; makefile: 15
file content (39 lines) | stat: -rw-r--r-- 2,673 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##contig=<ID=chr20,length=64444167>
##INFO=<ID=AC,Number=A,Type=Integer,Description="Alternate Allele Counts">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total Number Allele Counts">
##phasing=phased
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG01879	HG00551	HG00403	HG00096	HG01583
chr20	10000775	rs13042390	A	G	255	PASS	AC=4;AN=10	GT	0|0	0|1	1|0	0|1	1|0
chr20	10001327	rs141420999	A	C	255	PASS	AC=1;AN=10	GT	0|0	0|0	0|0	0|0	0|1
chr20	10001999	rs13038545	A	T	255	PASS	AC=1;AN=10	GT	0|0	0|0	0|0	0|1	0|0
chr20	10002000	rs13037970	C	T	255	PASS	AC=1;AN=10	GT	0|0	0|0	0|0	0|1	0|0
chr20	10002077	rs6057071	G	A	255	PASS	AC=8;AN=10	GT	1|1	0|1	1|1	1|1	0|1
chr20	10002092	rs559251430	A	G	255	PASS	AC=1;AN=10	GT	0|0	0|0	1|0	0|0	0|0
chr20	10002161	rs11906973	A	T	255	PASS	AC=1;AN=10	GT	0|0	0|0	0|0	1|0	0|0
chr20	10002243	rs60292786	T	C	255	PASS	AC=1;AN=10	GT	0|0	0|0	0|0	1|0	0|0
chr20	10002468	rs6118851	G	A	255	PASS	AC=2;AN=10	GT	0|0	0|0	1|1	0|0	0|0
chr20	10002652	rs6039649	T	C	255	PASS	AC=7;AN=10	GT	1|1	0|0	1|1	1|0	1|1
chr20	10002751	rs74623966	A	G	255	PASS	AC=1;AN=10	GT	0|0	0|0	0|0	1|0	0|0
chr20	10004393	rs17507263	A	G	255	PASS	AC=4;AN=10	GT	0|1	0|0	1|1	0|0	0|1
chr20	10005015	rs6108374	G	A	255	PASS	AC=5;AN=10	GT	0|1	0|1	1|1	0|0	0|1
chr20	10005281	rs4816196	T	C	255	PASS	AC=3;AN=10	GT	0|0	0|0	1|1	0|0	0|1
chr20	10005437	rs8115116	A	G	255	PASS	AC=1;AN=10	GT	0|0	0|1	0|0	0|0	0|0
chr20	10005695	rs6087099	A	G	255	PASS	AC=8;AN=10	GT	1|1	1|1	1|1	0|1	0|1
chr20	10005758	rs6057072	C	T	255	PASS	AC=4;AN=10	GT	0|1	0|0	1|1	0|0	0|1
chr20	10005834	rs56242456	T	C	255	PASS	AC=1;AN=10	GT	0|0	0|1	0|0	0|0	0|0
chr20	10006207	rs78434004	C	A	255	PASS	AC=2;AN=10	GT	0|0	0|0	0|1	0|0	0|1
chr20	10006628	rs8123132	C	T	255	PASS	AC=3;AN=10	GT	1|0	1|0	0|0	0|1	0|0
chr20	10006761	rs6118852	A	G	255	PASS	AC=4;AN=10	GT	0|0	0|1	1|1	0|0	0|1
chr20	10006826	rs4816197	A	G	255	PASS	AC=4;AN=10	GT	0|0	0|1	1|1	0|0	0|1
chr20	10007565	rs8124931	C	A	255	PASS	AC=1;AN=10	GT	0|1	0|0	0|0	0|0	0|0
chr20	10008603	rs4816199	G	A	255	PASS	AC=8;AN=10	GT	1|1	1|1	1|1	0|1	0|1
chr20	10009048	rs7343217	G	A	255	PASS	AC=3;AN=10	GT	0|0	0|0	1|1	0|0	0|1
chr20	10009051	rs881767	A	G	255	PASS	AC=4;AN=10	GT	1|1	1|0	0|0	0|1	0|0
chr20	10009180	rs2327258	C	T	255	PASS	AC=8;AN=10	GT	1|1	1|1	1|1	0|1	0|1
chr20	10009286	rs4078321	G	A	255	PASS	AC=1;AN=10	GT	0|0	0|1	0|0	0|0	0|0
chr20	10009481	rs724674	G	A	255	PASS	AC=8;AN=10	GT	1|1	1|1	1|1	0|1	0|1
chr20	10009685	rs35232282	CTA	C	255	PASS	AC=3;AN=10	GT	0|0	0|0	1|1	0|0	0|1
chr20	10009927	rs12480468	C	T	255	PASS	AC=1;AN=10	GT	0|0	0|1	0|0	0|0	0|0