File: mipe.dtd

package info (click to toggle)
mipe 1.1-9
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, bullseye, forky, sid, trixie
  • size: 392 kB
  • sloc: perl: 2,806; sh: 20; makefile: 10
file content (53 lines) | stat: -rw-r--r-- 2,459 bytes parent folder | download | duplicates (6)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
<!--MIPE - Minimal Information for PCR Experiments-->
<!--author: Jan Aerts-->
<!--http://sourceforge.net/projects/mipe-->
<!--Current version of MIPE format: v0.9-->
<!ELEMENT accession       (#PCDATA)>
<!ELEMENT amb             (#PCDATA)>
<!ELEMENT enzyme          (#PCDATA)>
<!ELEMENT file            (#PCDATA)>
<!ELEMENT haplo           (#PCDATA)>
<!ELEMENT id              (#PCDATA)>
<!ELEMENT modified        (#PCDATA)>
<!ELEMENT name            (#PCDATA)>
<!ELEMENT number          (#PCDATA)>
<!ELEMENT oligo           (#PCDATA)>
<!ELEMENT pos             (#PCDATA)>
<!ELEMENT pos_design      (#PCDATA)>
<!ELEMENT pos_source      (#PCDATA)>
<!ELEMENT program         (#PCDATA)>
<!ELEMENT project         (#PCDATA)>
<!ELEMENT rank            (#PCDATA)>
<!ELEMENT read            (#PCDATA)>
<!ELEMENT remark          (#PCDATA)>
<!ELEMENT researcher      (#PCDATA)>
<!ELEMENT revcomp         (#PCDATA)>
<!ELEMENT seq             (#PCDATA)>
<!ELEMENT snp_id          (#PCDATA)>
<!ELEMENT species         (#PCDATA)>
<!ELEMENT specific        (#PCDATA)>
<!ELEMENT strand          (#PCDATA)>
<!ELEMENT tail            (#PCDATA)>
<!ELEMENT temp            (#PCDATA)>
<!ELEMENT time            (#PCDATA)>
<!ELEMENT tm              (#PCDATA)>
<!ELEMENT type            (#PCDATA)>
<!ELEMENT version         (#PCDATA)>
<!ELEMENT genotype        (snp_id, amb, remark*)>
<!ELEMENT sample          (id, file?, genotype*, remark*)>
<!ELEMENT assay           (type, id, ((oligo?, specific?, tail?, strand?)|enzyme), remark*)>
<!ELEMENT snp             (id, pos, pos_design?, pos_source?, amb?, rank?, assay*, remark*)>
<!ELEMENT use             (seq, revcomp, snp*, sample*, remark*)>
<!ELEMENT source          ((accession|file|seq), name?, species?, type?, remark*)>
<!ELEMENT postelongation  (temp, time)>
<!ELEMENT elongation      (temp, time)>
<!ELEMENT annealing       (temp, time)>
<!ELEMENT denaturation    (temp, time)>
<!ELEMENT cycle           (number, denaturation, annealing, elongation)>
<!ELEMENT predenaturation (temp, time)>
<!ELEMENT profile         (name?, predenaturation?, cycle*, postelongation?)>
<!ELEMENT primer1         (oligo?, seq?, tm?, remark*)>
<!ELEMENT primer2         (oligo?, seq?, tm?, remark*)>
<!ELEMENT design          (source, pos?, seq?, primer1?, primer2?, profile?, remark*)>
<!ELEMENT pcr             (id, modified+, project*, researcher+, species+, design, use?, remark*)>
<!ELEMENT mipe            (version, pcr*, remark*)>