File: changelog

package info (click to toggle)
mira 4.9.6-5
  • links: PTS, VCS
  • area: main
  • in suites: bullseye
  • size: 23,748 kB
  • sloc: cpp: 78,076; xml: 25,820; sh: 11,379; lex: 1,211; makefile: 500; perl: 425
file content (302 lines) | stat: -rw-r--r-- 9,835 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
mira (4.9.6-5) unstable; urgency=medium

  * Team upload

  [ Michael R. Crusoe ]
  * Update homepage URL
  * Mark mira-doc as Multi-Arch: foreign
  * Secure URI in copyright format
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
  * Remove trailing whitespace in debian/changelog
  * Remove trailing whitespace in debian/control
  * Remove trailing whitespace in debian/copyright

  [ Andreas Tille ]
  * Remove unneeded get-orig-source target
  * fix race condition during doc build
    Closes: #970443
  * Standards-Version: 4.5.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Do not parse d/changelog (routine-update)
  * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Set field Upstream-Name in debian/copyright.

  [ Nilesh Patra ]
  * s/DEB_SOURCE/pkg/
  * Remove useless debian/*.dirs

 -- Nilesh Patra <npatra974@gmail.com>  Thu, 17 Sep 2020 16:34:27 +0530

mira (4.9.6-4) unstable; urgency=medium

  [ Steffen Moeller ]
  * debian/upstream/metadata: Added references to
    OMICtools and bio.tools

  [ Andreas Tille ]
  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.1
  * No extra manpages from Debian

 -- Andreas Tille <tille@debian.org>  Wed, 19 Sep 2018 22:13:29 +0200

mira (4.9.6-3) unstable; urgency=medium

  * Team upload.

  [ Nadiya Sitdykova ]
  * Add autopkgtest test-suite for denovo, mapping and est assembly

 -- Nadiya Sitdykova <rovenskasa@gmail.com>  Mon, 12 Jun 2017 18:29:50 -0400

mira (4.9.6-2) unstable; urgency=medium

  * debhelper 10
  * d/watch: version=4
  * Build-Depends: libfl-dev
    Closes: #846442
  * Remove unused lintian override

 -- Andreas Tille <tille@debian.org>  Sat, 03 Dec 2016 19:05:24 +0100

mira (4.9.6-1) unstable; urgency=medium

  * New upstream release.
  * dropped all patches except for one spelling fix, as they were incorporated
    upstream
  * dropped the -examples package for now, as the minidemo is missing from
    upstream in this release.
  * our manpages have been adopted and adapted upstream, so they have been
    removed
  * added architecture independent package for rfam 12s rRNA database
  * enable building docs & rfam packages separately
  * Standards-Version bump to 3.9.8
  * Updated package descriptions to remove tools that upstream no longer
    provides
  * minidemo is missing from 4.9.6, commented out -examples package for now
  * cleaned out unnecessary stanzas from debian/rules

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 04 May 2016 11:18:26 -0700

mira (4.9.5-6) unstable; urgency=medium

  * Fix build issue with gcc-6
    Closes: #822474

 -- Andreas Tille <tille@debian.org>  Mon, 25 Apr 2016 23:48:55 +0200

mira (4.9.5-5) unstable; urgency=medium

  * Make build reproducible; fix FTBFS on non-'C' locales

 -- Michael R. Crusoe <crusoe@ucdavis.edu>  Wed, 03 Feb 2016 06:31:56 +0000

mira (4.9.5-4) unstable; urgency=medium

  * Packaging moved from SVN to Git
  * Loosen boost dependencies.

 -- Michael R. Crusoe <crusoe@ucdavis.edu>  Tue, 02 Feb 2016 00:45:21 -0800

mira (4.9.5-3) unstable; urgency=medium

  * Remove *.cc files that are created by old flex version which breaks
    build otherwise
    Closes: #812681

 -- Andreas Tille <tille@debian.org>  Wed, 27 Jan 2016 13:19:53 +0100

mira (4.9.5-2) unstable; urgency=medium

  * Verify that package builds without problems with gcc-5
    Closes: #793261
  * override false lintian positives
  * Fix spelling
  * wrote missing manpage and moved manpages to separate dir

 -- Andreas Tille <tille@debian.org>  Fri, 04 Dec 2015 12:56:09 +0100

mira (4.9.5-1) unstable; urgency=medium

  * New upstream version
  * Moved debian/upstream to debian/upstream/metadata
  * cme fix dpkg-control

 -- Andreas Tille <tille@debian.org>  Wed, 01 Jul 2015 22:09:47 +0200

mira (4.0.2-1) unstable; urgency=low

  * new upstream version

 -- Thorsten Alteholz <debian@alteholz.de>  Sat, 26 Apr 2014 19:00:35 +0200

mira (4.0-1) unstable; urgency=low

  [ Thorsten Alteholz ]
  * New upstream version
  * debian/rules: add boost dir in auto_configure (Closes: #735798)

  [ Andreas Tille ]
  * cme fix dpkg-control
  * debian/patches/{make.patch,spelling.patch}: applied upstream (thus removed)

 -- Thorsten Alteholz <debian@alteholz.de>  Sun, 02 Feb 2014 22:51:35 +0100

mira (3.9.18-1) unstable; urgency=low

  * New upstream version (most patches applied by upstream)
  * debian/copyright: Add Upstream-Contact
  * debian/control: cme fix dpkg-control
  * debian/mira-assembler.lintian-overrides: deleted unused override
  * debian/rules: Prevent installing duplicated data, rather
    create symlink
  * debian/mirabait.1: wrote missing manpage

 -- Andreas Tille <tille@debian.org>  Fri, 09 Aug 2013 13:59:24 +0200

mira (3.9.17-1) unstable; urgency=low

  [ Thorsten Alteholz ]
  * new upstream version
  * debian/control: Standards-Version set to 3.9.4 (no changes)
  * debian/control: DM-Upload-Allowed: removed
  * debian/control: use dh 9
  * debian/control: add dependency to libboost-iostreams-dev
  * debian/control: improve extended descriptions
  * debian/control: change VCS-tags according to new lintian
  * debian/rules: get-orig-source added
  * debian/watch: do not look at dev-versions
  * debian/mira-doc.README.Debian: correct path to documentation

  [ Dmitrijs Ledkovs ]
  * Build depend on libboost-all-dev and libbz2-dev.
  * Add boost-minimal patch, to add boost-libraries in final linking,
    fixing FTBFS (Closes: #701322)
  * Enable parallel builds, to speed up compilation.

  [ Andreas Tille ]
  * delete debian/README.source which is outdated / wrong
  * debian/*.1: Wrote / reviewed manpages for all installed programs
  * debian/miraSearchESTSNPs.1: Wrote manpage but mention that this
    functionality is deactivated in version 3.9.17
  * debian/mira-assembler.manpages: Simply install all manpages that can be
    found
  * Removed debian/obsolete.mira-assembler.install
  * debian/control: The actual scripts do not contain the .tcl suffix
    in our installation
  * debian/rules:
     - Currently miraSearchESTSNPs and miraclip claim to be deactivated so
       why bothering installing these?
     - Use xz compression for binaries

 -- Andreas Tille <tille@debian.org>  Fri, 07 Jun 2013 08:34:21 +0200

mira (3.4.0.1-3) unstable; urgency=low

  [ Charles Plessy ]
  * Build-depend on libgoogle-perftools-dev instead of libtcmalloc-minimal0
    (debian/control, debian/README.source, debian/rules).
    Closes: #673527, #674822
  * Conforms to Policy 3.9.3 (debian/control, no other changes needed).
  * Rely on dpkg source format 3.0 (quilt) for the patches, and remove
    build dependance on quilt (debian/control, debian/rules).
  * Verbose Debhelper (debian/rules).

  [ Andreas Tille ]
  * debian/upstream: very small fix to prevent bibcheck warning

 -- Charles Plessy <plessy@debian.org>  Mon, 28 May 2012 10:51:01 +0900

mira (3.4.0.1-2) unstable; urgency=low

  [ Andreas Tille ]
  * Remove two patches:
    - read_default_constructor.patch which introduces a duplicate
      bposhashstat_t() definition
    - fix_duplicate_bposhashstat_t_definition.patch which removes
      this duplicate afterwards

  [ Charles Plessy ]
  * Removed unconditional dependency on libtcmalloc-minimal0 (debian/control).
    Closes: #654884
  * Machine-readable debian/copyright file.

 -- Charles Plessy <plessy@debian.org>  Sat, 07 Jan 2012 13:24:48 +0900

mira (3.4.0.1-1) unstable; urgency=low

  * New upstream version
    Closes: #648762 (at least if I'm not mislead - feel free to reopen)
  * debian/control:
    - Added myself to Uploaders
    - Depends: libtcmalloc-minimal0 [i386 amd64]
      Thanks for the patch to Michael Terry <michael.terry@canonical.com>
      however I left out powerpc where libtcmalloc-minimal0 is not
      available
      Closes: #649093
    - Fixed Vcs fields
  * debian/patches/fix_duplicate_bposhashstat_t_definition.patch
    Remove duplicate definition of bposhashstat_t()

 -- Andreas Tille <tille@debian.org>  Thu, 08 Dec 2011 08:50:19 +0100

mira (3.4.0-3ubuntu1) lucid; urgency=low

  * Small fix to dependencies - there is no "mira" binary package

 -- Tim Booth <tbooth@ceh.ac.uk>  Fri, 02 Dec 2011 15:00:35 +0000

mira (3.4.0-3) unstable; urgency=low

  * Rendering Tim's additions available for Debian

 -- Steffen Moeller <moeller@debian.org>  Sat, 03 Sep 2011 01:02:10 +0200

mira (3.4.0-2ubuntu5) lucid; urgency=low

  * Small fix to clean target and suppress warnings
    on Lucid backport.
  * Fixed missing dependency which caused misleading configure
    failure.
  * Yet another missing build dep - flex and xxd

 -- Tim Booth <tbooth@ceh.ac.uk>  Tue, 30 Aug 2011 17:17:11 +0100

mira (3.4.0-2) unstable; urgency=low

  * Fixing source tree (removed PDF with no source)

 -- Steffen Moeller <moeller@debian.org>  Mon, 29 Aug 2011 22:54:53 +0200

mira (3.4.0-1) UNRELEASED; urgency=low

  * New upstream version.
    - added default constructor to avoid FTBFS
  * Sponsoring Tim's work for Debian
  * Using 3.0 (quilt) source format for bz2 upstream

 -- Steffen Moeller <moeller@debian.org>  Tue, 23 Aug 2011 20:46:32 +0200

mira (3.4rc3-2) lucid; urgency=low

  * Version 3.2.1.8 has been removed from SF.net.  Packaging the
    latest RC instead.
  * Fixed linking against tcmalloc (see README)
  * Fixed build of docs - HTML is installed in mira-doc

 -- Tim Booth <tbooth@ceh.ac.uk>  Fri, 19 Aug 2011 12:35:12 +0100

mira (3.2.1.8-1) UNRELEASED; urgency=low

  * Initial release (Closes: #435915)

 -- Steffen Moeller <moeller@debian.org>  Fri, 04 Mar 2011 11:55:25 +0100

mira (3~rc2-1) UNRELEASED; urgency=low

  * Initial packaging.

 -- Charles Plessy <plessy@debian.org>  Tue, 08 Sep 2009 13:35:31 +0900