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Documentation for the Code
**************************
.. automodule:: mirtop
bam
===
.. automodule:: mirtop.bam.bam
:members:
.. automodule:: mirtop.bam.filter
:members:
exporter
========
.. automodule:: mirtop.exporter.isomirs
:members:
.. automodule:: mirtop.exporter.fasta
:members:
.. automodule:: mirtop.exporter.vcf
:members:
gff
===
.. automodule:: mirtop.gff.body
:members:
.. automodule:: mirtop.gff.compare
:members:
.. automodule:: mirtop.gff.header
:members:
.. automodule:: mirtop.gff.merge
:members:
.. automodule:: mirtop.gff.stats
:members:
.. automodule:: mirtop.gff.update
:members:
.. automodule:: mirtop.gff.validator
:members:
importer
========
.. automodule:: mirtop.importer.isomirsea
:members:
.. automodule:: mirtop.importer.prost
:members:
.. automodule:: mirtop.importer.seqbuster
:members:
.. automodule:: mirtop.importer.srnabench
:members:
.. automodule:: mirtop.importer.optimir
:members:
.. automodule:: mirtop.importer.manatee
:members:
libs
====
.. automodule:: mirtop.libs.do
:members:
.. automodule:: mirtop.libs.fastq
:members:
.. automodule:: mirtop.libs.parse
:members:
.. automodule:: mirtop.libs.utils
:members:
mirna
=====
.. automodule:: mirtop.mirna.annotate
:members:
.. automodule:: mirtop.mirna.fasta
:members:
.. automodule:: mirtop.mirna.keys
:members:
.. automodule:: mirtop.mirna.mapper
:members:
.. automodule:: mirtop.mirna.realign
:members:
.. automodule:: mirtop.mirna.snps
:members:
classes
=======
.. autoclass:: mirtop.mirna.realign.hits
:members:
.. autoclass:: mirtop.mirna.realign.isomir
:members:
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