File: test-docs.sh

package info (click to toggle)
mlpack 4.6.2-1
  • links: PTS, VCS
  • area: main
  • in suites:
  • size: 31,272 kB
  • sloc: cpp: 226,039; python: 1,934; sh: 1,198; lisp: 414; makefile: 85
file content (437 lines) | stat: -rwxr-xr-x 12,116 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
#!/usr/bin/env bash
#
# Extract C++ code blocks from either an individual Markdown file or a directory
# full of Markdown files.  This does roughly what you would expect it to, but
# there is a little bit of magic:
#
#  * All ```c++ code blocks are extracted into their own .cpp files.
#
#  * mlpack.hpp is included in each file, and each code block is placed in an
#      `int main() { }` block.
#
#  * If Eigen or xtensor is detected, correct includes are added.
#
#  * All data referenced in http URLs is downloaded.
#
#  * If a code block is just a class declaration, it will be added to the *next*
#      code block file.
#
# Once all code blocks are compiled, they are run just to make sure they run
# correctly.  If a single file was passed, all inputs and outputs are printed;
# if an entire directory is given, program output is only printed on error.

if [[ $# -ne 1 ]];
then
  echo "Usages: " >&2;
  echo " - $0 input_file.md" >&2;
  echo " - $0 markdown_directory/" >&2;
  exit 2;
fi

if [ -z "$CXX" ];
then
  echo "You must set \$CXX to the compiler you want to use!" >&2;
  exit 1;
fi

if [ -z "$CXXFLAGS" ];
then
  echo "Warning: \$CXXFLAGS is unset.  If ensmallen, Armadillo, STB, or cereal ";
  echo "  are not in standard locations, builds will fail!  Be sure to use ";
  echo "  absolute paths, not relative paths.";
fi

if [ -z "$LDFLAGS" ];
then
  echo "Warning: \$LDFLAGS is unset.  If libarmadillo.so is not in a standard ";
  echo "  location, builds will fail!";
fi

# First determine what files we are looking at.
if [ -d $1 ];
then
  files=`find $1 -iname '*.md'`;
  mode="directory";
else
  files=$1;
  mode="file";
fi

# Extract the C++ code blocks from a particular file, creating
# $output_prefix1.cpp, $output_prefix2.cpp, and so on and so forth.
#
# The code in those snippets will be placed into an int main() { } block, and
# mlpack.hpp will be included.
extract_code_blocks()
{
  input_file=$1;
  output_prefix=$2;

  # Extract into temporary files.
  sed -n '/^```c++/,/^```/ p' < $input_file > $input_file.tmp;
  output_file_id=0;
  output_file_display="00"; # Hopefully no file has more than 100 examples...

  # Track whether or not the last line was a fence, since we get them two at a
  # time.  We initially set this to 1, because the first fence does not have a
  # preceding fence close above it.
  last_line_fence=1;

  while IFS= read -r line;
  do
    if [[ $last_line_fence == 1 ]];
    then
      # Skip this line---it will be a fence opening.
      last_line_fence=0;
      continue;
    fi

    if [[ $line == '```' ]];
    then
      last_line_fence=1;

      if [ -f $output_prefix$output_file_display.body.cpp ];
      then
        # Determine whether we need a main() function for the code.  Also check
        # whether the file is simply a class definition, in which case we don't
        # need to do anything except prepare it to be inserted into the next
        # example.
        has_main=`grep 'int main(' $output_prefix$output_file_display.body.cpp | wc -l`;
        has_class1=`grep '^  class\|^  struct' $output_prefix$output_file_display.body.cpp | wc -l`;
        has_class2=`grep '^  };' $output_prefix$output_file_display.body.cpp | wc -l`;
        class_decl=0;
        if [ $has_class1 -ne 0 -a $has_class2 -ne 0 ];
        then
          class_decl=1;
        fi;

        if [ $has_main -eq 0 -a $class_decl -eq 0 ];
        then
          # Create main() function to wrap the code in.
          echo "#include <mlpack.hpp>" > $output_prefix$output_file_display.cpp;
          echo "" >> $output_prefix$output_file_display.cpp;

          # Insert any class definitions.
          if [ -f $output_prefix$output_file_display.defn.cpp ];
          then
            cat $output_prefix$output_file_display.defn.cpp >> $output_prefix$output_file_display.cpp;
            rm -f $output_prefix$output_file_display.defn.cpp;
          fi

          echo "int main()" >> $output_prefix$output_file_display.cpp;
          echo "{" >> $output_prefix$output_file_display.cpp;

          # Insert the code itself.
          cat $output_prefix$output_file_display.body.cpp >> $output_prefix$output_file_display.cpp;
          rm -f $output_prefix$output_file_display.body.cpp;

          # Close main() function.
          echo "}" >> $output_prefix$output_file_display.cpp;
        elif [[ "$class_decl" == "1" ]];
        then
          # If the function is only a class declaration, set it aside, along
          # with any other declarations, for the next program.
          next_id=$(($output_file_id + 1));
          next_display=$(printf "%02d" $next_id);
          if [ -f $output_prefix$output_file_display.defn.cpp ];
          then
            mv $output_prefix$output_file_display.defn.cpp $output_prefix$next_display.defn.cpp;
            cat $output_prefix$output_file_display.body.cpp >> $output_prefix$next_display.defn.cpp;
            rm -f $output_prefix$output_file_display.body.cpp;
          else
            mv $output_prefix$output_file_display.body.cpp $output_prefix$next_display.defn.cpp;
          fi
        else
          # The file should be able to compile on its own.
          mv $output_prefix$output_file_display.body.cpp $output_prefix$output_file_display.cpp;
        fi

        # Detect if we need any to add any special headers.  We have to do this
        # when we finish with the file...
        if [ -f $output_prefix$output_file_display.cpp ];
        then
          if [[ `grep 'Eigen::' $output_prefix$output_file_display.cpp | wc -l` -gt 0 ]];
          then
            sed -i '1s/^/#include <Eigen\/Dense>\n/' $output_prefix$output_file_display.cpp;
          fi

          if [[ `grep 'xt::' $output_prefix$output_file_display.cpp | wc -l` -gt 0 ]];
          then
            sed -i '1s/^/#include <xtensor\/xrandom.hpp>\n/' $output_prefix$output_file_display.cpp;
            sed -i '1s/^/#include <xtensor\/xarray.hpp>\n/' $output_prefix$output_file_display.cpp;
          fi
        fi
      fi

      output_file_id=$(($output_file_id + 1));
      output_file_display=$(printf "%02d" $output_file_id);

      continue;
    fi

    # Include indentation (two spaces).
    echo "  $line" >> $output_prefix$output_file_display.body.cpp;
  done < $input_file.tmp;

  rm -f $output_prefix*.defn.cpp; # Remove any unused definitions.
  rm -f $input_file.tmp;
}

compile_code_blocks()
{
  input_dir=$1;

  # If there are no files to compile, leave early.
  if ! compgen -G $input_dir/*.cpp >/dev/null;
  then
    return;
  fi

  for f in $input_dir/*.cpp;
  do
    echo "  Compiling $f...";
    of=${f/.cpp/.o};
    lf=${f%.cpp};

    if ! $CXX -std=c++17 -Isrc/ $CXXFLAGS -c -o $of $f 2>$of.tmp;
    then
      echo "Compilation of the following program failed:";
      echo "";
      cat $f;
      echo "";
      echo "First ten lines of error output:";
      head $of.tmp;
      echo "";
      echo "For full error output run either:";
      echo " - less $of.tmp";
      echo " - $CXX -std=c++17 -Isrc/ $CXXFLAGS -c -o $of $f";
      echo "";
      echo "Did you set \$CXX and \$CXXFLAGS correctly?"
      exit 1;
    fi

    if ! $CXX -o $lf $of $LDFLAGS -larmadillo 2>$lf.tmp;
    then
      echo "Linking of the following program failed:"
      echo "";
      cat $f;
      echo "";
      echo "First ten lines of error output:";
      head $lf.tmp;
      echo "";
      echo "For full error output run either:";
      echo " - less $lf.tmp";
      echo " - $CXX -o $lf $of $LDFLAGS -larmadillo";
      echo "";
      echo "Did you set \$CXX and \$LDFLAGS correctly?"
      exit 1;
    fi
  done
}

download_http_artifacts()
{
  input_dir=$1;
  output_dir=$2;

  # Get a list of all HTTP resources.
  artifacts=`grep 'http[s]*://' $input_dir/*.cpp |\
      sed 's/^.*\(http[^ ]*\).*$/\1/' |\
      sort |\
      uniq |\
      grep 'csv\|arff\|bin\|png\|jpg\|bz2\|gz' |\
      sed 's/\.$//'`;
  cd $output_dir;
  for a in $artifacts;
  do
    out_a=`basename $a`;
    if [ ! -f $out_a ];
    then
      echo "  Downloading $a...";
      if ! curl -s -O $a;
      then
        echo "Error downloading $a!";
        exit 1;
      fi

      if [[ $a == *.gz ]];
      then
        echo "Unpacking $a...";
        tar -xzpf *.gz;
      fi

      if [[ $a == *.bz2 ]];
      then
        echo "Unpacking $a...";
        tar -xjpf *.bz2;
      fi
    fi
  done
  cd - >/dev/null;

  # Special case: if we are looking at core.md, this has two special files we
  # need to create that is used in the example.
  f=`basename $input_dir`;
  if [[ "$f" == "core" || "$f" == "matrices" ]];
  then
    cd $output_dir;
    echo "  Creating data.csv...";
    cat > data.csv << EOF
3,3,3,3,0
3,4,4,3,0
3,4,4,3,0
3,3,4,3,0
3,6,4,3,0
2,4,4,3,0
2,4,4,1,0
3,3,3,2,0
3,4,4,2,0
3,4,4,2,0
3,3,4,2,0
3,6,4,2,0
2,4,4,2,0
EOF

    echo "  Creating mixed_string_data.csv...";
    cat > mixed_string_data.csv << EOF
3,"hello",3,"f",0
3,"goodbye",4,"f",0
3,"goodbye",4,"e",0
3,"hello",4,"d",0
3,"hello",4,"d",0
2,"hello",4,"d",0
2,"hello",4,"d",0
3,"goodbye",3,"f",0
3,"goodbye",4,"f",0
3,"hello",4,"f",0
3,"hello",4,"c",0
3,"hello",4,"f",0
2,"hello",4,"c",0
EOF
    cd - >/dev/null;
  fi
}

run_code_blocks()
{
  input_dir=$1;

  for f in $input_dir/*.cpp;
  do
    f_exec=${f%.cpp};
    if [[ "$mode" == "directory" ]];
    then
      echo "  Running $f_exec...";
      if ! ./$f_exec 2>&1 >/dev/null;
      then
        echo "  Error running $f_exec!";
        echo "  ---------------------------------------------------------------------  ";
        echo "  Contents of $f:";
        echo "";
        cat $f;
        echo "";
        exit 1;
      fi
    else
      echo "  ---------------------------------------------------------------------  ";
      echo "  Contents of $f:";
      echo "";
      cat $f;
      echo "";
      echo "  ---------------------------------------------------------------------  ";
      echo "  Output of $f_exec:";
      echo "";

      if ! ./$f_exec;
      then
        echo "";
        echo "Error running $f_exec!  See output above.";
        exit 1;
      fi
      echo "";
      echo "  ---------------------------------------------------------------------  ";
    fi
  done
}

# Main loop: process the files we were asked to process.
mkdir -p doc/build/;
for f in $files;
do
  if [[ "$mode" == "directory" ]];
  then
    declare -a files_to_skip=(
        # These files have small incomplete snippets that can't compile into
        # standalone programs.
        "deploy_windows.md"
        "hpt.md"
        "cv.md"
        "timer.md"
        "bindings.md"
        "iodoc.md"
        "distances.md"
        "elemtype.md"
        "kernels.md"
        "trees.md"
        # Skip the quickstart, since it depends on some specific data.
        "cpp.md"
        # The tutorials are old and are likely to be replaced, so let's not test
        # them.
        "amf.md"
        "ann.md"
        "approx_kfn.md"
        "cf.md"
        "datasetmapper.md"
        "det.md"
        "emst.md"
        "fastmks.md"
        "image.md"
        "kmeans.md"
        "linear_regression.md"
        "neighbor_search.md"
        "range_search.md"
        "reinforcement_learning.md"
        "asynchronous_learning.md"
        "ddpg.md"
        "q_learning.md"
        "sac.md"
        "td3.md"
    );

    skip=0;
    for skip_f in "${files_to_skip[@]}";
    do
        base_f=`basename $f`;
        if [ "$base_f" = "$skip_f" ];
        then
            skip=1;
            break;
        fi
    done

    if [[ $skip -eq 1 ]];
    then
      continue;
    fi
  fi

  echo "Building documentation for $f...";

  build_dir_tmp=${f#doc/};
  build_dir=${build_dir_tmp%.md};
  base_file=`basename $f .md`;
  mkdir -p doc/build/$build_dir/;

  extract_code_blocks $f doc/build/$build_dir/$base_file;
  # If there are no C++ files, don't do anything else..
  if ! compgen -G doc/build/$build_dir/*.cpp >/dev/null;
  then
    continue;
  fi

  compile_code_blocks doc/build/$build_dir;
  download_http_artifacts doc/build/$build_dir doc/build/;
  cd doc/build/;
  run_code_blocks $build_dir;
  cd ../../;
done