1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
|
<?xml version="1.0" encoding="utf-8"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="cs" lang="cs">
<head>
<meta http-equiv="content-type" content="text/html; charset=utf-8" />
<meta name="author" content="Created by Martin Strohalm PhD; www.biographics.cz" />
<meta name="copyright" content="Martin Strohalm" />
<meta name="keywords" content="mMass, mass spectrometry, open source, peaklist analysis, MALDI, martin strohalm, proteomics, bioinforatics" lang="en" />
<meta name="description" content="Program mMass presents an open source package of simple tools for mass spectrometric data analysis. It consist of several modules and tools for protein sequence handling and mass spectrum interpretation with focus on common proteomic tasks." lang="en" />
<title>mMass - Open Source MS Tool | Documentation | Compare Peaklists Tool</title>
<link rel="icon" href="/favicon.ico" type="image/png" />
<link rel="stylesheet" type="text/css" media="print" href="/styles/print/style.css" />
<link rel="stylesheet" type="text/css" media="screen" href="/styles/screen/style.css" />
</head>
<body>
<div id="container">
<!-- page header -->
<div id="header">
<h1><a href="/" title="Homepage"><span>mMass - Open Source Mass Spectrometry Tool</span></a></h1>
<p id="jump"><a href="#mainMenu">Jump to main menu</a></p>
</div>
<!-- page content -->
<div id="content">
<!-- main panel -->
<div id="panelsMain">
<div id="documentation" class="panel">
<h2><span>Compare Peaklists Tool</span></h2>
<p>Few experiments can be covered by just one measurement. In general, multiple samples and spectra are produced, and interpretation involves comparing the spectra. Using the <em>Compare Peaklist</em> module <span class="hotkey">[Tools → Compare Peaklists]</span> <img src="figures/icon_mcomp.png" alt="icon" class="icon" />, an unlimited number of peaklists can be loaded, and compared with the current peaklist within a specified tolerance. Peaklists can be loaded individually or automatically, if set in application preferences, when additional spectra are added to the <em>Mass Spectrum</em> module. Loaded peaklists can be easily matched to the current peaklist.</p>
<div class="images">
<img src="figures/mcomp_layout.png" alt="compare peaklists tool" />
<p>Compare peaklists tool.</p>
</div>
<h3 id="ch-add">Add peaklist</h3>
<p>To add a new peaklist press <em>Add Peaklist</em> button or simply drag the file to the <em>Loaded Peaklists</em> window (Mac version only).</p>
<h3 id="ch-remove">Remove peaklist</h3>
<p>To remove already loaded peaklist select appropriate name(s) in the <em>Loaded Peaklists</em> window and from context menu choose <em>Remove Selected</em>.</p>
<h3 id="ch-rename">Rename peaklist</h3>
<p>To rename any peaklist select appropriate name in the <em>Loaded Peaklists</em> window and from context menu choose <em>Rename Peaklist…</em> or just double-click the name.</p>
<h3 id="ch-match">Data matching</h3>
<p>See the separate <a href="mmatch.html" title="go to chapter">chapter</a>.</p>
</div>
<!-- main panel end -->
<hr id="mainStop"/>
</div>
<!-- side panels -->
<div id="panelsSide">
<div id="mainMenu" class="panel">
<h2><span>Main menu</span></h2>
<ul>
<li><a href="/" title="latest news"><span>News</span></a></li>
<li><a href="features.html" title="mMass main features"><span>Features</span></a></li>
<li><a href="download.html" title="download source files or binary distribution"><span>Download</span></a></li>
<li><href=index.html title="detailed mMass description"><span>Documentation</span></a></li>
<li><a href="message.html" title="send bug report, function request etc."><span>Contact</span></a></li>
</ul>
</div>
<div id="chapters" class="panel">
<h2><span>Chapters</span></h2>
<ul>
<li><a href="index.html" title="mMass structure..."><span>Introduction</span></a></li>
<li><a href="mmass.html" title="Layout, menubar, toolbar, statusbar..."><span>Application layout</span></a></li>
<li><a href="mdoc.html" title="Open, save, print, export, info..."><span>Document basics</span></a></li>
<li><a href="mspec.html" title="Spectrum manipulations, peaks labelling, comparison..."><span>Spectrum viewer</span></a></li>
<li><a href="mpeak.html" title="Peaklist options..."><span>Peaklist panel</span></a></li>
<li><a href="mproc.html" title="Calibration, crop..."><span>Data processing</span></a></li>
<li><a href="mseq.html" title="Sequence editting, modifications, search for mass..."><span>Sequence editor</span></a></li>
<li><a href="mcut.html" title="In silicio protein digest..."><span>Protein digest</span></a></li>
<li><a href="mfrag.html" title="In silicio peptide fragmentation..."><span>Peptide fragmentation</span></a></li>
<li><a href="mdiff.html" title="Check differences among all the peaks in peaklist..."><span>Check differences</span></a></li>
<li><a href="mcomp.html" title="Compare multiple peaklists..."><span>Compare peaklists</span></a></li>
<li><a href="mmatch.html" title="Match teoretical data to spectrum..."><span>Data matching</span></a></li>
<li><a href="mmascot.html" title="Mascot search tools..."><span>Mascot tools</span></a></li>
</ul>
</div>
<!-- side panels end -->
</div>
<!-- overflow block -->
<div id="contentStop"></div>
<!-- page content end -->
</div>
<!-- page footer -->
<div id="footer">
<p>© Martin Strohalm</p>
</div>
<!-- container end -->
</div>
</body>
</html>
|
