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env:
CIRRUS_CLONE_SUBMODULES: true
task:
name: FreeBSD
freebsd_instance:
image_family: freebsd-14-2-snap
install_script: pkg install -y cmake git samtools
compile_script: |
mkdir build && cd build
cmake -DCMAKE_BUILD_TYPE=Release -DHAVE_TESTS=1 -DENABLE_WERROR=1 -DHAVE_SSE4_1=1 ..
make -j $(sysctl -n hw.ncpu)
test_script: ./util/regression/run_regression.sh ./build/src/mmseqs SCRATCH
task:
name: "Old compilers"
container:
image: debian:jessie-slim
cpu: 4
memory: 8G
matrix:
- name: Clang-4
install_script: |
echo "deb [trusted=yes] http://archive.debian.org/debian jessie main" > /etc/apt/sources.list
echo "deb [trusted=yes] http://archive.debian.org/debian-security jessie/updates main" >> /etc/apt/sources.list
apt-get update --yes --force-yes || true
apt-get install wget clang-4.0 libc++-dev make git ca-certificates --yes --force-yes --no-install-suggests --no-install-recommends
env:
CC: clang-4.0
CXX: clang++-4.0
- name: GCC-4.9
install_script: |
echo "deb [trusted=yes] http://archive.debian.org/debian jessie main" > /etc/apt/sources.list
echo "deb [trusted=yes] http://archive.debian.org/debian-security jessie/updates main" >> /etc/apt/sources.list
apt-get update --yes --force-yes || true
apt-get install wget gcc-4.9 g++-4.9 make git ca-certificates --yes --force-yes --no-install-suggests --no-install-recommends
env:
CC: gcc-4.9
CXX: g++-4.9
compile_script: |
mkdir -p /opt/cmake-3.31.0
wget https://cmake.org/files/v3.31/cmake-3.31.0-linux-x86_64.sh
chmod +x cmake-3.31.0-linux-x86_64.sh
./cmake-3.31.0-linux-x86_64.sh --skip-license --prefix=/opt/cmake-3.31.0
export PATH=/opt/cmake-3.31.0/bin/:$PATH
mkdir build && cd build
cmake -DCMAKE_BUILD_TYPE=Release -DHAVE_TESTS=1 -DENABLE_WERROR=0 -DHAVE_SSE4_1=1 -DREQUIRE_OPENMP=0 ..
make -j $(nproc --all)
test_script: |
export PATH=/opt/cmake-3.31.0/bin/:$PATH
MMSEQS_NUM_THREADS=4 ./util/regression/run_regression.sh ./build/src/mmseqs SCRATCH SEARCH
|
