File: map.sh

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mmseqs2 18-8cc5c%2Bds-1
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#!/bin/sh -e
[ -z "$MMSEQS" ] && echo "Please set the environment variable \$MMSEQS to your MMSEQS binary." && exit 1;
[ "$#" -ne 4 ] && echo "Please provide <queryDB> <targetDB> <outDB> <tmp>" && exit 1;
[ ! -f "$1.dbtype" ] && echo "$1.dbtype not found!" && exit 1;
[ ! -f "$2.dbtype" ] && echo "$2.dbtype not found!" && exit 1;
[   -f "$3.dbtype" ] && echo "$3.dbtype exists already!" && exit 1;
[ ! -d "$4" ] && echo "tmp directory $4 not found!" && mkdir -p "$4";

# shellcheck disable=SC2086
"$MMSEQS" search "$1" "$2" "$3" "$4" ${SEARCH_PAR}