File: index.html

package info (click to toggle)
mmtk 2.7.9-1
  • links: PTS, VCS
  • area: main
  • in suites: jessie, jessie-kfreebsd
  • size: 11,788 kB
  • ctags: 6,600
  • sloc: python: 18,050; ansic: 12,400; makefile: 129; csh: 3
file content (133 lines) | stat: -rw-r--r-- 5,924 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133


<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">


<html xmlns="http://www.w3.org/1999/xhtml">
  <head>
    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
    
    <title>Overview: module code &mdash; MMTK User Guide 2.7.7 documentation</title>
    
    <link rel="stylesheet" href="../_static/default.css" type="text/css" />
    <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
    
    <script type="text/javascript">
      var DOCUMENTATION_OPTIONS = {
        URL_ROOT:    '../',
        VERSION:     '2.7.7',
        COLLAPSE_INDEX: false,
        FILE_SUFFIX: '.html',
        HAS_SOURCE:  true
      };
    </script>
    <script type="text/javascript" src="../_static/jquery.js"></script>
    <script type="text/javascript" src="../_static/underscore.js"></script>
    <script type="text/javascript" src="../_static/doctools.js"></script>
    <link rel="top" title="MMTK User Guide 2.7.7 documentation" href="../index.html" /> 
  </head>
  <body>
    <div class="related">
      <h3>Navigation</h3>
      <ul>
        <li class="right" style="margin-right: 10px">
          <a href="../genindex.html" title="General Index"
             accesskey="I">index</a></li>
        <li class="right" >
          <a href="../py-modindex.html" title="Python Module Index"
             >modules</a> |</li>
        <li><a href="../index.html">MMTK User Guide 2.7.7 documentation</a> &raquo;</li> 
      </ul>
    </div>  

    <div class="document">
      <div class="documentwrapper">
        <div class="bodywrapper">
          <div class="body">
            
  <h1>All modules for which code is available</h1>
<ul><li><a href="MMTK/Biopolymers.html">MMTK.Biopolymers</a></li>
<li><a href="MMTK/Bonds.html">MMTK.Bonds</a></li>
<li><a href="MMTK/ChargeFit.html">MMTK.ChargeFit</a></li>
<li><a href="MMTK/ChemicalObjects.html">MMTK.ChemicalObjects</a></li>
<li><a href="MMTK/Collections.html">MMTK.Collections</a></li>
<li><a href="MMTK/ConfigIO.html">MMTK.ConfigIO</a></li>
<li><a href="MMTK/DCD.html">MMTK.DCD</a></li>
<li><a href="MMTK/Deformation.html">MMTK.Deformation</a></li>
<li><a href="MMTK/Dynamics.html">MMTK.Dynamics</a></li>
<li><a href="MMTK/Environment.html">MMTK.Environment</a></li>
<li><a href="MMTK/Field.html">MMTK.Field</a></li>
<li><a href="MMTK/ForceFields/ANMFF.html">MMTK.ForceFields.ANMFF</a></li>
<li><a href="MMTK/ForceFields/Amber.html">MMTK.ForceFields.Amber</a></li>
<li><a href="MMTK/ForceFields/BondFF.html">MMTK.ForceFields.BondFF</a></li>
<li><a href="MMTK/ForceFields/CalphaFF.html">MMTK.ForceFields.CalphaFF</a></li>
<li><a href="MMTK/ForceFields/DeformationFF.html">MMTK.ForceFields.DeformationFF</a></li>
<li><a href="MMTK/ForceFields/ForceFieldTest.html">MMTK.ForceFields.ForceFieldTest</a></li>
<li><a href="MMTK/ForceFields/LennardJonesFF.html">MMTK.ForceFields.LennardJonesFF</a></li>
<li><a href="MMTK/ForceFields/Restraints.html">MMTK.ForceFields.Restraints</a></li>
<li><a href="MMTK/ForceFields/SPCEFF.html">MMTK.ForceFields.SPCEFF</a></li>
<li><a href="MMTK/FourierBasis.html">MMTK.FourierBasis</a></li>
<li><a href="MMTK/Geometry.html">MMTK.Geometry</a></li>
<li><a href="MMTK/InternalCoordinates.html">MMTK.InternalCoordinates</a></li>
<li><a href="MMTK/Minimization.html">MMTK.Minimization</a></li>
<li><a href="MMTK/MolecularSurface.html">MMTK.MolecularSurface</a></li>
<li><a href="MMTK/MoleculeFactory.html">MMTK.MoleculeFactory</a></li>
<li><a href="MMTK/NormalModes/BrownianModes.html">MMTK.NormalModes.BrownianModes</a></li>
<li><a href="MMTK/NormalModes/EnergeticModes.html">MMTK.NormalModes.EnergeticModes</a></li>
<li><a href="MMTK/NormalModes/VibrationalModes.html">MMTK.NormalModes.VibrationalModes</a></li>
<li><a href="MMTK/NucleicAcids.html">MMTK.NucleicAcids</a></li>
<li><a href="MMTK/PDB.html">MMTK.PDB</a></li>
<li><a href="MMTK/PDBMoleculeFactory.html">MMTK.PDBMoleculeFactory</a></li>
<li><a href="MMTK/ParticleProperties.html">MMTK.ParticleProperties</a></li>
<li><a href="MMTK/ProteinFriction.html">MMTK.ProteinFriction</a></li>
<li><a href="MMTK/Proteins.html">MMTK.Proteins</a></li>
<li><a href="MMTK/Random.html">MMTK.Random</a></li>
<li><a href="MMTK/Solvation.html">MMTK.Solvation</a></li>
<li><a href="MMTK/Subspace.html">MMTK.Subspace</a></li>
<li><a href="MMTK/Trajectory.html">MMTK.Trajectory</a></li>
<li><a href="MMTK/Universe.html">MMTK.Universe</a></li>
<li><a href="MMTK/Visualization.html">MMTK.Visualization</a></li>
<li><a href="MMTK/XML.html">MMTK.XML</a></li>
</ul>

          </div>
        </div>
      </div>
      <div class="sphinxsidebar">
        <div class="sphinxsidebarwrapper">
<div id="searchbox" style="display: none">
  <h3>Quick search</h3>
    <form class="search" action="../search.html" method="get">
      <input type="text" name="q" />
      <input type="submit" value="Go" />
      <input type="hidden" name="check_keywords" value="yes" />
      <input type="hidden" name="area" value="default" />
    </form>
    <p class="searchtip" style="font-size: 90%">
    Enter search terms or a module, class or function name.
    </p>
</div>
<script type="text/javascript">$('#searchbox').show(0);</script>
        </div>
      </div>
      <div class="clearer"></div>
    </div>
    <div class="related">
      <h3>Navigation</h3>
      <ul>
        <li class="right" style="margin-right: 10px">
          <a href="../genindex.html" title="General Index"
             >index</a></li>
        <li class="right" >
          <a href="../py-modindex.html" title="Python Module Index"
             >modules</a> |</li>
        <li><a href="../index.html">MMTK User Guide 2.7.7 documentation</a> &raquo;</li> 
      </ul>
    </div>
    <div class="footer">
        &copy; Copyright 2010, Konrad Hinsen.
      Created using <a href="http://sphinx.pocoo.org/">Sphinx</a> 1.1.3.
    </div>
  </body>
</html>