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########################################################################################
# #
# Author: Herve Menager, #
# Organization:'Biological Software and Databases' Group, Institut Pasteur, Paris. #
# Distributed under GPLv2 Licence. Please refer to the COPYING.LIB document. #
# #
########################################################################################
from Mobyle.Workflow import Parser
from Mobyle.WorkflowJob import WorkflowJob
if __name__ == "__main__":
mp = Parser()
#wf = mp.parse('/tmp/workflow.xml') # 1st example
wf = mp.parse('/tmp/workflow2.xml') # 2nd example
class SessionFake(object):
def getKey(self):
return "workflowjobdemotestmodule"
wf.owner = SessionFake()
parameters = {'sequences': """>A
TTTT
>B
TATA""",
'alignment_format': 'PHYLIP'}
wj = WorkflowJob(workflow=wf,email='hmenager@pasteur.fr')
print wj.id
#for key, value in parameters.items(): # set values for 1st example
# wj.set_value(key, value)
wj.srun() #synchronous calls
#wj.run #asynchronous calls
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