1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
|
########################################################################################
# #
# Author: Bertrand Neron, #
# Organization:'Biological Software and Databases' Group, Institut Pasteur, Paris. #
# Distributed under GPLv2 Licence. Please refer to the COPYING.LIB document. #
# #
########################################################################################
import os
import logging
_log = logging.getLogger(__name__)
from Mobyle.Execution.DRMAA import DRMAA
class PbsDRMAA(DRMAA):
"""
Run the commandline by a system call
"""
def __init__( self, drmaa_config ):
super( PbsDRMAA , self ).__init__( drmaa_config )
# workaround the bug in librmaa from opendsp
if 'HOME' not in os.environ:
os.environ[ 'HOME' ] = '/dev/null'
|
