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########################################################################################
# #
# Author: Bertrand Neron, #
# Organization:'Biological Software and Databases' Group, Institut Pasteur, Paris. #
# Distributed under GPLv2 Licence. Please refer to the COPYING.LIB document. #
# #
########################################################################################
from Mobyle.ConfigManager import Config
import os
class ConfigTest(Config):
def __init__(self):
self.test_dir = '/tmp/test_Mobyle'
self._logdir = "/dev/null"
self._mobylehome = os.environ[ 'MOBYLEHOME' ]
self._root_url = 'file://%s' % self.test_dir
self._htdocs_prefix = ''
self._mobyle_htdocs = self.test_dir
self._cgi_prefix = 'cgi-bin'
self._portal_prefix = '/portal'
self._repository_path = os.path.realpath( os.path.join( self._mobyle_htdocs , 'data' ) )
self._services_path = os.path.realpath( os.path.join( self._repository_path , 'services' ) )
self._servers_path = os.path.realpath( os.path.join( self._services_path, 'servers' ) )
self._index_path = os.path.realpath( os.path.join( self._services_path ,'index' ) )
self._results_path = os.path.realpath( os.path.join( self._repository_path , 'jobs' ) )
self._user_sessions_path = os.path.realpath( os.path.join( self._repository_path , 'sessions' ) )
self._portal_path = os.path.realpath( os.path.join( self._mobyle_htdocs , 'portal' ) )
self._repository_url = "%s/%s" % ( self._root_url , 'data' )
self._results_url = "%s/%s" % ( self._repository_url , 'jobs' )
self._user_sessions_url = "%s/%s" % ( self._repository_url , 'sessions' )
self._servers_url = "%s/%s/%s" % ( self._repository_url , 'services' , 'servers' )
# self._debug = 0
# self._particular_debug = {}
# self._accounting = False
self._session_debug = False
self._status_debug = False
#
# self._binary_path = []
# self._databanks_config = {}
self._dns_resolver = False
# self._opt_email = False
# self._particular_opt_email = {}
# self._anonymous_session = "captcha"
# self._authenticated_session = 'email'
#
# self._openid = False
# self._openidstore_path = os.path.join( self._mobyle_htdocs , 'data' , 'openidstore' )
#
# self._refresh_frequency = 240
# self._dont_email_result = False
self._filelimit = 2147483648 # 2 Gib
self._sessionlimit = 52428800 # 50 Mib
self._previewDataLimit = 1048576 # 1 Mib
# self._result_remain = 10 # in day
self._lang = 'en'
#
# self._email_delay = 20
# self._maxmailsize = 2097152
self._maintainer = [ 'maintainer@nowhere.com' ]
self._help = 'helpy@nowhere.com'
self._mailhost = ''
self._sender = 'sender@nowhere.com'
#
self._dataconverter = {}
# self._execution_system_alias = { 'SYS' : Local.Config.Execution.SYSConfig() }
# self._execution_system_config = { 'DEFAULT' : self._execution_system_alias[ 'SYS'] }
# self._revert_alias = dict( [ ( config , alias ) for alias , config in self._execution_system_alias.items() ] )
# self._default_Q = 'default_q'
# self._particular_Q = {}
# self._programs_deployment_include = ['*']
# self._programs_deployment_exclude = []
# self._programs_deployment_order = [ 'include' , 'exclude' ]
# self._disable_all = False
# self._disabled_services =[]
# self._authorized_services = {}
self._all_portals = {}
# self._exported_programs = []
# self._admindir = os.path.join( self._results_path , 'ADMINDIR' )
#
# self._GAcode = None
__configTest = ConfigTest()
Config._ref = __configTest
#disabling the loggers
import logging
class NullHandler(logging.Handler):
def emit(self, record):
pass
null_handlers = [ NullHandler() ]
from Mobyle.MobyleLogger import MLogger
ml = MLogger()
logging.getLogger('Mobyle').handlers = null_handlers
logging.getLogger('Mobyle.Session').handlers = null_handlers
logging.getLogger('Mobyle.account').handlers = null_handlers
logging.getLogger('Mobyle.builder').handlers = null_handlers
logging.getLogger('Mobyle.access').handlers = null_handlers
from Mobyle import Registry
registry_test = Registry.Registry()
local = Registry.ServerDef( 'local' ,
'file://%s' % __configTest.portal_path() ,
__configTest._help ,
'file://%s' % __configTest.services_path() ,
'file://%s' % __configTest.results_path()
)
registry_test.addServer( local )
Registry.registry = registry_test
def find_exe(program):
def is_exe(fpath):
return os.path.exists(fpath) and os.access(fpath, os.X_OK)
fpath, fname = os.path.split(program)
if fpath:
if is_exe(program):
return program
else:
for path in os.environ["PATH"].split( os.pathsep ):
exe_file = os.path.join( path, program )
if is_exe( exe_file ):
return exe_file
return None
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