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########################################################################################
# #
# Author: Nicolas Joly #
# Organization:'Biological Software and Databases' Group, Institut Pasteur, Paris. #
# Distributed under GPLv2 Licence. Please refer to the COPYING.LIB document. #
# #
########################################################################################
import unittest2 as unittest
import os, sys, stat
import shutil
from time import mktime
MOBYLEHOME = os.path.abspath(os.path.join(os.path.dirname(__file__), "../../../"))
os.environ['MOBYLEHOME'] = MOBYLEHOME
if (MOBYLEHOME) not in sys.path:
sys.path.append(MOBYLEHOME)
if (os.path.join(MOBYLEHOME, 'Src')) not in sys.path:
sys.path.append(os.path.join(MOBYLEHOME, 'Src'))
import Mobyle.Test.MobyleTest
from Mobyle.MobyleError import MobyleError
from Mobyle.Admin import Admin
class AdminTest(unittest.TestCase):
def setUp(self):
## Config
self.cfg = Mobyle.ConfigManager.Config()
## Inits
shutil.rmtree(self.cfg.test_dir, ignore_errors=True)
os.makedirs(self.cfg.test_dir)
self.cwd = os.getcwd()
os.chdir(self.cfg.test_dir)
## Admin
self.adm = self._fakeadmin()
def tearDown(self):
os.chdir(self.cwd)
shutil.rmtree(self.cfg.test_dir)
def testAdmin(self):
## Check valid paths
Admin(".")
Admin(Admin.FILENAME)
## Check invalid paths
adm_dir = "dummy"
self.assertRaises(MobyleError, Admin, adm_dir)
os.makedirs(adm_dir)
self.assertRaises(MobyleError, Admin, adm_dir)
## Empty file (fails silently)
open(Admin.FILENAME, 'w').close()
Admin(Admin.FILENAME)
## Missing read permissions
os.chmod(Admin.FILENAME, 0222)
self.assertRaises(MobyleError, Admin, ".")
def testcreate(self):
## Create a minimal admin file
os.unlink(Admin.FILENAME)
Admin.create(self.cfg.test_dir, None, None, None)
## Should fail if already exists
self.assertTrue(os.access(Admin.FILENAME, os.F_OK))
self.assertRaises(MobyleError, Admin.create, self.cfg.test_dir, None, None, None)
## Check alternate path
altdir = os.path.join(self.cfg.test_dir, "alternate")
os.makedirs(altdir)
Admin.create(altdir, None, None, None)
def testrefresh(self):
adm_queue = 'mobyle'
self.assertEqual(self.adm.getQueue(), None)
adm = Admin(Admin.FILENAME)
adm.setQueue(adm_queue)
adm.commit()
self.assertEqual(self.adm.getQueue(), None)
self.adm.refresh()
self.assertEqual(self.adm.getQueue(), adm_queue)
def testcommit(self):
## Commit should update file
bef = os.stat(Admin.FILENAME)
adm = Admin(Admin.FILENAME)
adm.commit()
aft = os.stat(Admin.FILENAME)
self.assertTrue(bef.st_ino != aft.st_ino and bef.st_mtime <= aft.st_mtime)
## Cannot create/rename temporary file
mod = os.stat(".").st_mode
os.chmod(".", mod & ~stat.S_IWUSR)
self.assertRaises(MobyleError, adm.commit)
os.chmod(".", mod)
## Nothing to save (fails silently)
adm.me.clear()
adm.commit()
def testDate(self):
## Ensure this is a valid date
date = self.adm.getDate()
mktime(date)
## Missing key
self.adm.me.clear()
self.assertEqual(self.adm.getDate(), None)
def testEmail(self):
adm_email = "user@domain.fr"
## Created without email info
os.unlink(Admin.FILENAME)
Admin.create(self.cfg.test_dir, None, None, None)
adm = Admin(Admin.FILENAME)
self.assertEqual(adm.getEmail(), None)
## Created with email info
os.unlink(Admin.FILENAME)
Admin.create(self.cfg.test_dir, None, None, None, userEmail=adm_email)
adm = Admin(".")
self.assertEqual(adm.getEmail(), adm_email)
## Missing key
adm.me.clear()
self.assertEqual(adm.getEmail(), None)
def testRemote(self):
adm_remote = "127.0.0.1/localhost"
## Created without remote info
os.unlink(Admin.FILENAME)
Admin.create(self.cfg.test_dir, None, None, None)
adm = Admin(Admin.FILENAME)
self.assertEqual(adm.getRemote(), str(None))
## Created with remote info
os.unlink(Admin.FILENAME)
Admin.create(self.cfg.test_dir, adm_remote, None, None)
adm = Admin(Admin.FILENAME)
self.assertEqual(adm.getRemote(), adm_remote)
## Missing key
adm.me.clear()
self.assertEqual(adm.getRemote(), None)
def testWorkflow(self):
workflowID = "adm_dummy"
## Created without session info
os.unlink(Admin.FILENAME)
Admin.create(self.cfg.test_dir, None, None, None)
adm = Admin(Admin.FILENAME)
self.assertEqual(adm.getWorkflowID(), None)
## Created with session info
os.unlink(Admin.FILENAME)
Admin.create(self.cfg.test_dir , None, None, None, workflowID=workflowID)
adm = Admin(Admin.FILENAME)
self.assertEqual(adm.getWorkflowID(), workflowID)
## Missing key
adm.me.clear()
self.assertEqual(adm.getWorkflowID(), None)
def testSession(self):
adm_session = "adm_dummy"
## Created without session info
os.unlink(Admin.FILENAME)
Admin.create(self.cfg.test_dir, None, None, None)
adm = Admin(Admin.FILENAME)
self.assertEqual(adm.getSession(), None)
## Created with session info
os.unlink(Admin.FILENAME)
Admin.create(self.cfg.test_dir, None, None, None, sessionID=adm_session)
adm = Admin(Admin.FILENAME)
self.assertEqual(adm.getSession(), adm_session)
## Missing key
adm.me.clear()
self.assertEqual(adm.getSession(), None)
def testJobName(self):
adm_jobname = "adm_dummy"
## Created without job name info
os.unlink(Admin.FILENAME)
Admin.create(self.cfg.test_dir, None, None, None)
adm = Admin(Admin.FILENAME)
self.assertEqual(adm.getJobName(), str(None))
## Created with job name info
os.unlink(Admin.FILENAME)
Admin.create(self.cfg.test_dir, None, adm_jobname, None)
adm = Admin(Admin.FILENAME)
self.assertEqual(adm.getJobName(), adm_jobname)
## Missing key
adm.me.clear()
self.assertEqual(adm.getJobName(), None)
def testJobID(self):
adm_jobid = "adm_dummy"
## Created without job id info
os.unlink(Admin.FILENAME)
Admin.create(self.cfg.test_dir, None, None, None)
adm = Admin(Admin.FILENAME)
self.assertEqual(adm.getJobID(), str(None))
## Created with job id info
os.unlink(Admin.FILENAME)
Admin.create(self.cfg.test_dir, None, None, adm_jobid)
adm = Admin(Admin.FILENAME)
self.assertEqual(adm.getJobID(), adm_jobid)
## Missing key
adm.me.clear()
self.assertEqual(adm.getJobID(), None)
def testMD5(self):
adm_md5 = "adm_dummy"
## Default
os.unlink(Admin.FILENAME)
Admin.create(self.cfg.test_dir, None, None, None)
adm = Admin(Admin.FILENAME)
self.assertEqual(adm.getMd5(), None)
## Set value
adm.setMd5(adm_md5)
self.assertEqual(adm.getMd5(), adm_md5)
## Missing key
adm.me.clear()
self.assertEqual(adm.getMd5(), None)
def testExecutionAlias(self):
adm_executionalias = "adm_dummy"
## Default
os.unlink(Admin.FILENAME)
Admin.create(self.cfg.test_dir, None, None, None)
adm = Admin(Admin.FILENAME)
self.assertEqual(adm.getExecutionAlias(), None)
## Set value
adm.setExecutionAlias(adm_executionalias)
self.assertEqual(adm.getExecutionAlias(), adm_executionalias)
## Missing key
adm.me.clear()
self.assertEqual(adm.getExecutionAlias(), None)
def testQueue(self):
adm_queue = "adm_dummy"
## Default
os.unlink(Admin.FILENAME)
Admin.create(self.cfg.test_dir, None, None, None)
adm = Admin(Admin.FILENAME)
self.assertEqual(adm.getQueue(), None)
## Set value
adm.setQueue(adm_queue)
self.assertEqual(adm.getQueue(), adm_queue)
## Missing key
adm.me.clear()
self.assertEqual(adm.getQueue(), None)
def testNumber(self):
adm_number = "adm_dummy"
## Default
os.unlink(Admin.FILENAME)
Admin.create(self.cfg.test_dir, None, None, None)
adm = Admin(Admin.FILENAME)
self.assertEqual(adm.getNumber(), None)
## Set value
adm.setNumber(adm_number)
self.assertEqual(adm.getNumber(), adm_number)
## Missing key
adm.me.clear()
self.assertEqual(adm.getNumber(), None)
def _fakeadmin(self):
Admin.create(self.cfg.test_dir, None, None, None)
return Admin(".")
if __name__ == '__main__':
unittest.main()
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