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########################################################################################
# #
# Author: Bertrand Neron, Nicolas Joly #
# Organization:'Biological Software and Databases' Group, Institut Pasteur, Paris. #
# Distributed under GPLv2 Licence. Please refer to the COPYING.LIB document. #
# #
########################################################################################
import unittest2 as unittest
import os, sys
import shutil
from lxml import etree
from time import localtime, strftime
MOBYLEHOME = os.path.abspath(os.path.join(os.path.dirname(__file__), "../../../"))
os.environ['MOBYLEHOME'] = MOBYLEHOME
if (MOBYLEHOME) not in sys.path:
sys.path.append(MOBYLEHOME)
if (os.path.join(MOBYLEHOME, 'Src')) not in sys.path:
sys.path.append(os.path.join(MOBYLEHOME, 'Src'))
import Mobyle.Test.MobyleTest
import Mobyle.Session
from Mobyle.Classes.DataType import DataTypeFactory
from Mobyle.MobyleError import MobyleError, NoSpaceLeftError, SessionError, UserValueError
from Mobyle.Service import MobyleType
from Mobyle.Transaction import Transaction
from Mobyle.Utils import Admin
#tmpdir = '/tmp/mobyle'
class SessionTest(unittest.TestCase):
def setUp(self):
## Config
self.cfg = Mobyle.ConfigManager.Config()
shutil.rmtree( self.cfg.test_dir , ignore_errors=True )
## Session
self.session_key = 'fake_session'
self.session = self._fakesession(self.session_key)
## Data
self.data_name = 'datafile'
self.data_text = 'A sample user data string'
def tearDown(self):
shutil.rmtree( self.cfg.test_dir , ignore_errors=True )
## Generic methods ...
def testisLocal(self):
self.assertTrue(self.session.isLocal())
def testgetDir(self):
xdir = os.path.join(self.cfg.user_sessions_path(), self.session_key)
self.assertEqual(self.session.getDir(), xdir)
def testgetKey(self):
self.assertEqual(self.session.getKey(), self.session_key)
def testgetBaseInfo(self):
email = 'name@domain.ext'
self.assertEqual(self.session.getBaseInfo(), (None, False, True))
self.session.setEmail(email)
self.assertEqual(self.session.getBaseInfo(), (email, False, True))
def testisActivated(self):
self.assertTrue(self.session.isActivated())
def testgetEmail(self):
email = 'name@domain.ext'
self.assertEqual(self.session.getEmail(), None)
self.session.setEmail(email)
self.assertEqual(self.session.getEmail(), email)
def testsetEmail(self):
email = 'name@domain.ext'
self.assertNotEqual(self.session.getEmail(), email)
self.session.setEmail(email)
self.assertEqual(self.session.getEmail(), email)
## Invalid email should be rejected
self.assertRaises(UserValueError, self.session.setEmail, 'dummy')
## Data methods ...
def testaddData(self):
mtype = self._faketype('Text')
## Add data by content
did = self.session.addData(self.data_name, mtype,
content = self.data_text)
self.assertTrue(self.session.hasData(did))
session_data = os.path.join(self.session.getDir(), did)
self.assertTrue(os.access(session_data, os.F_OK|os.R_OK))
## Add data from job
url = self._fakejob('A00000000000000')
job = Mobyle.MobyleJob.MobyleJob(ID = url)
dat = os.path.join( job.getDir(), self.data_name )
fh = open(dat, 'w')
fh.write(self.data_text * 2)
fh.close()
did = self.session.addData(self.data_name, mtype,
producer = job)
self.assertTrue(self.session.hasData(did))
session_data = os.path.join(self.session.getDir(), did)
self.assertTrue(os.access(session_data, os.F_OK|os.R_OK))
## Add data from session
session = self._fakesession('temp_session')
did = session.addData(self.data_name, mtype,
content = self.data_text)
did = self.session.addData(did, mtype,
producer = session)
self.assertTrue(self.session.hasData(did))
## NEEDCARE: Data does not exists in source session or is private
self.assertRaises(SessionError, self.session.addData, 'foobar', mtype,
producer = session)
## Check that non file types are rejected
mtype = self._faketype('String')
self.assertRaises(MobyleError, self.session.addData, None, mtype,
content = self.data_text)
## Check invalid combinations for content & producer
mtype = self._faketype('Text')
self.assertRaises(MobyleError, self.session.addData, None, mtype)
self.assertRaises(MobyleError, self.session.addData, None, mtype,
content = None, producer = None)
self.assertRaises(MobyleError, self.session.addData, None, mtype,
content = self.data_text, producer = job)
## Exceeding session size limit should fail
self.session.sessionLimit = 0
self.assertRaises(NoSpaceLeftError, self.session.addData, 'size', mtype,
content = self.data_text * 10)
def testremoveData(self):
mtype = self._faketype('Text')
did = self.session.addData(self.data_name, mtype,
content = self.data_text)
self.assertTrue(self.session.hasData(did))
self.session.removeData(did)
self.assertFalse(self.session.hasData(did))
session_data = os.path.join(self.session.getDir(), did)
self.assertFalse(os.access(session_data, os.F_OK))
## Cannot remove missing/private data
self.assertRaises(SessionError, self.session.removeData, did)
self.assertRaises(MobyleError, self.session.removeData,
self.session.FILENAME)
def testrenameData(self):
user_name = 'userfile'
mtype = self._faketype('Text')
## Add and rename data
did = self.session.addData(self.data_name, mtype,
content = self.data_text)
self.assertNotEqual(self.data_name, user_name)
self.session.renameData(did, user_name)
## Cannot rename a missing data
self.assertRaises(SessionError, self.session.renameData, None,
user_name)
def testgetContentData(self):
mtype = self._faketype('Text')
lim = self.cfg.previewDataLimit()
## Add and get small data content
did = self.session.addData(self.data_name, mtype,
content = self.data_text)
(flag, data) = self.session.getContentData(did)
self.assertTrue(flag == 'FULL')
self.assertTrue(data == self.data_text)
## Add/Get big data content
did = self.session.addData(self.data_name, mtype,
content = self.data_text * (lim / len(self.data_text) + 1))
(flag, data) = self.session.getContentData(did)
self.assertTrue(flag == 'HEAD')
self.assertTrue(len(data) == self.cfg.previewDataLimit())
(flag, data) = self.session.getContentData(did, False)
self.assertTrue(flag == 'HEAD')
self.assertTrue(len(data) == self.cfg.previewDataLimit())
(flag, data) = self.session.getContentData(did, True)
self.assertTrue(flag == 'FULL')
self.assertTrue(len(data) > self.cfg.previewDataLimit())
## Cannot get content for missing/private data
self.assertRaises(SessionError, self.session.getContentData, 'dummy')
self.assertRaises(MobyleError, self.session.getContentData,
self.session.FILENAME)
def testgetDataSize(self):
mtype = self._faketype('Text')
## Add data and get its size
did = self.session.addData(self.data_name, mtype,
content = self.data_text)
size = self.session.getDataSize(did)
self.assertEqual(size, len(self.data_text))
## Size from missing data should fail
self.session.removeData(did)
self.assertRaises(SessionError, self.session.getDataSize, did)
def testhasData(self):
mtype = self._faketype('Text')
did = self.session.addData(self.data_name, mtype,
content = self.data_text)
self.assertTrue(self.session.hasData(did))
self.session.removeData(did)
self.assertFalse(self.session.hasData(did))
def testgetAllData(self):
mtype = self._faketype('Text')
data = self.session.getAllData()
self.assertTrue(len(data) == 0)
self.session.addData(self.data_name, mtype,
content = self.data_text)
data = self.session.getAllData()
self.assertTrue(len(data) == 1)
self.session.addData(self.data_name, mtype,
content = self.data_text * 2)
data = self.session.getAllData()
self.assertTrue(len(data) == 2)
def testgetData(self):
mtype = self._faketype('Text')
## Add and get data
did = self.session.addData(self.data_name, mtype,
content = self.data_text)
data = self.session.getData(did)
self.assertEqual(data['dataName'], did)
## Cannot get missing data
self.session.removeData(did)
self.assertRaises(SessionError, self.session.getData, did)
## Jobs methods ...
def testhasJob(self):
url = self._fakejob('A00000000000000')
self.assertFalse(self.session.hasJob(url))
self.session.addJob(url)
self.assertTrue(self.session.hasJob(url))
self.session.removeJob(url)
self.assertFalse(self.session.hasJob(url))
def testgetAllJobs(self):
job_list = self.session.getAllJobs()
self.assertTrue(len(job_list) == 0)
url = self._fakejob('A00000000000000')
self.session.addJob(url)
job_list = self.session.getAllJobs()
self.assertTrue(len(job_list) == 1)
url = self._fakejob('A00000000000001')
self.session.addJob(url)
job_list = self.session.getAllJobs()
self.assertTrue(len(job_list) == 2)
## Check cleaned job
shutil.rmtree(Mobyle.JobState.url2path(url))
job_list = self.session.getAllJobs()
self.assertTrue(len(job_list) == 1)
def testgetJob(self):
url = self._fakejob('A00000000000000')
## Non existant job should fail
self.assertRaises(SessionError, self.session.getJob, url)
## Add and get job
self.session.addJob(url)
job = self.session.getJob(url)
self.assertTrue(job != None and job['jobID'] == url)
## Check cleaned (= directory removed) job
shutil.rmtree(Mobyle.JobState.url2path(url))
job = self.session.getJob(url)
self.assertTrue(job == None)
self.assertFalse(self.session.hasJob(url))
def testrenameJob(self):
url = self._fakejob('A00000000000000')
name = 'new user job name'
## Non existant job should fail
self.assertRaises(SessionError, self.session.renameJob, url, name)
## Add and rename job
self.session.addJob(url)
job = self.session.getJob(url)
self.assertNotEqual(name, job['userName'])
self.session.renameJob(url, name)
job = self.session.getJob(url)
self.assertEqual(name, job['userName'])
def testaddJob(self):
url = self._fakejob('A00000000000000')
## Add job
self.assertFalse(self.session.hasJob(url))
self.session.addJob(url)
self.assertTrue(self.session.hasJob(url))
## Already added job should fail
self.assertRaises(SessionError, self.session.addJob, url)
def testremoveJob(self):
url = self._fakejob('A00000000000000')
## Add and remove job
self.assertFalse(self.session.hasJob(url))
self.session.addJob(url)
self.assertTrue(self.session.hasJob(url))
self.session.removeJob(url)
self.assertFalse(self.session.hasJob(url))
## Already removed job should fail
self.assertRaises(SessionError, self.session.removeJob, url)
def testjobExists(self):
url = self._fakejob('A00000000000000')
self.assertTrue(self.session.jobExists(url) == 1)
shutil.rmtree(Mobyle.JobState.url2path(url))
self.assertTrue(self.session.jobExists(url) == 0)
def testSetAndGetJobLabel(self):
#there is not labels yet in jobs
url = self._fakejob('A00000000000000')
self.session.addJob(url)
label_recieved = self.session.getJobLabels(url)
self.assertEqual( label_recieved , [] )
#add one label
label_send = ['label_1']
self.session.setJobLabels( url , label_send )
#get one label
label_recieved = self.session.getJobLabels(url)
self.assertEqual( label_recieved , label_send )
#add 2 labels
label_send = ['label_2', 'label_2_bis']
self.session.setJobLabels( url , label_send )
#get 2 labels
label_recieved = self.session.getJobLabels(url)
self.assertEqual( label_recieved , label_send )
#add label in job which have already labels
new_label = [ 'label_3', 'label_3_bis' ]
self.session.setJobLabels( url , new_label )
#get 2 new labels
label_recieved = self.session.getJobLabels( url )
label_recieved = self.session.getJobLabels( url )
self.assertEqual( label_recieved , new_label )
def testgetAllUniqueLabels(self):
url = self._fakejob('A00000000000000')
self.session.addJob(url)
label_1= [ 'label_1', 'label_1_bis' ]
label_2= label_1 + [ 'label_2' ]
self.session.setJobLabels( url , label_1 )
self.session.setJobLabels( url , label_2 )
label_recieved = self.session.getJobLabels( url )
s = set( label_1 + label_2 )
unique = list( s )
unique.sort()
label_recieved.sort()
self.assertEqual( label_recieved , unique )
def testSetAndGetJobDescription(self):
url = self._fakejob('A00000000000000')
self.session.addJob(url)
job_description = "a new beautiful description for this job"
self.session.setJobDescription( url , job_description)
jobDescription_recieved = self.session.getJobDescription( url )
self.assertEqual( jobDescription_recieved , job_description )
url = self._fakejob('A00000000000001')
self.session.addJob(url)
jobDescription_recieved = self.session.getJobDescription( url )
self.assertEqual( None , jobDescription_recieved )
## Workflow methods ...
## Utilities ...
def _fakesession(self, key):
session_key = key
session_dir = os.path.join(self.cfg.user_sessions_path(), session_key)
session = Mobyle.Session.Session(session_dir, session_key, self.cfg)
os.makedirs(session_dir)
session_xml = os.path.join(session_dir, session.FILENAME)
Transaction.create(session_xml, False, True)
return session
def _faketype(self, mtype):
dtf = DataTypeFactory()
dtyp = dtf.newDataType(mtype)
return MobyleType(dtyp, None)
def _fakejob(self, key):
job_name = 'fake_job'
job_date = strftime("%x %X", localtime())
job_url = os.path.join(self.cfg.results_url(), job_name, key)
job_dir = Mobyle.JobState.url2path(job_url)
job_xml = os.path.join(job_dir, 'index.xml')
os.makedirs(job_dir)
## index.xml
root = etree.Element('jobState')
node = etree.Element('date')
node.text = job_date
root.append(node)
node = etree.Element('name')
node.text = 'dummy.xml'
root.append(node)
node = etree.Element('id')
node.text = job_url
root.append(node)
Mobyle.Utils.indent(root)
fh = open(job_xml, 'w')
fh.write(etree.tostring(root, xml_declaration=True, encoding='UTF-8'))
fh.close()
## .admin
#cwd = os.getcwd()
#os.chdir(job_dir)
Admin.create( job_dir, None, None, None)
#os.chdir(cwd)
return job_url
if __name__ == '__main__':
unittest.main()
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