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########################################################################################
# #
# Author: Herve Menager, #
# Organization:'Biological Software and Databases' Group, Institut Pasteur, Paris. #
# Distributed under GPLv2 Licence. Please refer to the COPYING.LIB document. #
# #
########################################################################################
from Mobyle.Workflow import Parser
if __name__ == "__main__":
mp = Parser()
wf = mp.parse('/tmp/workflow.xml')
class SessionFake(object):
def getKey(self):
return "workflowjobdemotestmodule"
wf.owner = SessionFake()
parameters = {'sequences': """>A
TTTT
>B
TATA""",
'alignment_format': 'PHYLIP',
'email': 'hmenager@pasteur.fr'}
import Mobyle.JobFacade
wj = Mobyle.JobFacade.JobFacade.getFromService(service=wf)
print wj.create(request_dict=parameters)
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