1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463
|
// import.cpp
/**
* Copyright (C) 2008 10gen Inc.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License, version 3,
* as published by the Free Software Foundation.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Affero General Public License for more details.
*
* You should have received a copy of the GNU Affero General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
#include "pch.h"
#include "client/dbclient.h"
#include "db/json.h"
#include "tool.h"
#include "../util/text.h"
#include <fstream>
#include <iostream>
#include <boost/program_options.hpp>
#include <boost/algorithm/string.hpp>
using namespace mongo;
namespace po = boost::program_options;
class Import : public Tool {
enum Type { JSON , CSV , TSV };
Type _type;
const char * _sep;
bool _ignoreBlanks;
bool _headerLine;
bool _upsert;
bool _doimport;
bool _jsonArray;
vector<string> _upsertFields;
static const int BUF_SIZE = 1024 * 1024 * 4;
string trimWhitespace(const string& str) {
if (str.size() == 0) {
return str;
}
size_t begin = 0;
size_t end = str.size() - 1;
while (begin < str.size() && isspace(str[begin])) { ++begin; } // Finds index of first non-whitespace character
while (end > 0 && isspace(str[end])) { --end; } // Finds index of last non-whitespace character
return str.substr(begin, end - begin + 1);
}
void csvTokenizeRow(const string& row, vector<string>& tokens) {
bool inQuotes = false;
bool prevWasQuote = false;
bool tokenQuoted = false;
string curtoken = "";
for (string::const_iterator it = row.begin(); it != row.end(); ++it) {
char element = *it;
if (element == '"') {
if (!inQuotes) {
inQuotes = true;
tokenQuoted = true;
curtoken = "";
} else {
if (prevWasQuote) {
curtoken += "\"";
prevWasQuote = false;
} else {
prevWasQuote = true;
}
}
} else {
if (inQuotes && prevWasQuote) {
inQuotes = false;
prevWasQuote = false;
tokens.push_back(curtoken);
}
if (element == ',' && !inQuotes) {
if (!tokenQuoted) { // If token was quoted, it's already been added
tokens.push_back(trimWhitespace(curtoken));
}
curtoken = "";
tokenQuoted = false;
} else {
curtoken += element;
}
}
}
if (!tokenQuoted || (inQuotes && prevWasQuote)) {
tokens.push_back(trimWhitespace(curtoken));
}
}
void _append( BSONObjBuilder& b , const string& fieldName , const string& data ) {
if ( _ignoreBlanks && data.size() == 0 )
return;
if ( b.appendAsNumber( fieldName , data ) )
return;
// TODO: other types?
b.append ( fieldName , data );
}
/*
* Reads one line from in into buf.
* Returns the number of bytes that should be skipped - the caller should
* increment buf by this amount.
*/
int getLine(istream* in, char* buf) {
if (_jsonArray) {
in->read(buf, BUF_SIZE);
uassert(13295, "JSONArray file too large", (in->rdstate() & ios_base::eofbit));
buf[ in->gcount() ] = '\0';
}
else {
in->getline( buf , BUF_SIZE );
log(1) << "got line:" << buf << endl;
}
uassert( 10263 , "unknown error reading file" ,
(!(in->rdstate() & ios_base::badbit)) &&
(!(in->rdstate() & ios_base::failbit) || (in->rdstate() & ios_base::eofbit)) );
int numBytesSkipped = 0;
if (strncmp("\xEF\xBB\xBF", buf, 3) == 0) { // UTF-8 BOM (notepad is stupid)
buf += 3;
numBytesSkipped += 3;
}
uassert(13289, "Invalid UTF8 character detected", isValidUTF8(buf));
return numBytesSkipped;
}
/*
* Parses a BSON object out of a JSON array.
* Returns number of bytes processed on success and -1 on failure.
*/
int parseJSONArray(char* buf, BSONObj& o) {
int len = 0;
while (buf[0] != '{' && buf[0] != '\0') {
len++;
buf++;
}
if (buf[0] == '\0')
return -1;
int jslen;
o = fromjson(buf, &jslen);
len += jslen;
return len;
}
/*
* Parses one object from the input file. This usually corresponds to one line in the input
* file, unless the file is a CSV and contains a newline within a quoted string entry.
* Returns a true if a BSONObj was successfully created and false if not.
*/
bool parseRow(istream* in, BSONObj& o, int& numBytesRead) {
boost::scoped_array<char> buffer(new char[BUF_SIZE+2]);
char* line = buffer.get();
numBytesRead = getLine(in, line);
line += numBytesRead;
if (line[0] == '\0') {
return false;
}
numBytesRead += strlen( line );
if (_type == JSON) {
// Strip out trailing whitespace
char * end = ( line + strlen( line ) ) - 1;
while ( end >= line && isspace(*end) ) {
*end = 0;
end--;
}
o = fromjson( line );
return true;
}
vector<string> tokens;
if (_type == CSV) {
string row;
bool inside_quotes = false;
size_t last_quote = 0;
while (true) {
string lineStr(line);
// Deal with line breaks in quoted strings
last_quote = lineStr.find_first_of('"');
while (last_quote != string::npos) {
inside_quotes = !inside_quotes;
last_quote = lineStr.find_first_of('"', last_quote+1);
}
row.append(lineStr);
if (inside_quotes) {
row.append("\n");
int num = getLine(in, line);
line += num;
numBytesRead += num;
uassert (15854, "CSV file ends while inside quoted field", line[0] != '\0');
numBytesRead += strlen( line );
} else {
break;
}
}
// now 'row' is string corresponding to one row of the CSV file
// (which may span multiple lines) and represents one BSONObj
csvTokenizeRow(row, tokens);
}
else { // _type == TSV
while (line[0] != '\t' && isspace(line[0])) { // Strip leading whitespace, but not tabs
line++;
}
boost::split(tokens, line, boost::is_any_of(_sep));
}
// Now that the row is tokenized, create a BSONObj out of it.
BSONObjBuilder b;
unsigned int pos=0;
for (vector<string>::iterator it = tokens.begin(); it != tokens.end(); ++it) {
string token = *it;
if ( _headerLine ) {
_fields.push_back(token);
}
else {
string name;
if ( pos < _fields.size() ) {
name = _fields[pos];
}
else {
stringstream ss;
ss << "field" << pos;
name = ss.str();
}
pos++;
_append( b , name , token );
}
}
o = b.obj();
return true;
}
public:
Import() : Tool( "import" ) {
addFieldOptions();
add_options()
("ignoreBlanks","if given, empty fields in csv and tsv will be ignored")
("type",po::value<string>() , "type of file to import. default: json (json,csv,tsv)")
("file",po::value<string>() , "file to import from; if not specified stdin is used" )
("drop", "drop collection first " )
("headerline","CSV,TSV only - use first line as headers")
("upsert", "insert or update objects that already exist" )
("upsertFields", po::value<string>(), "comma-separated fields for the query part of the upsert. You should make sure this is indexed" )
("stopOnError", "stop importing at first error rather than continuing" )
("jsonArray", "load a json array, not one item per line. Currently limited to 4MB." )
;
add_hidden_options()
("noimport", "don't actually import. useful for benchmarking parser" )
;
addPositionArg( "file" , 1 );
_type = JSON;
_ignoreBlanks = false;
_headerLine = false;
_upsert = false;
_doimport = true;
_jsonArray = false;
}
int run() {
string filename = getParam( "file" );
long long fileSize = 0;
istream * in = &cin;
ifstream file( filename.c_str() , ios_base::in);
if ( filename.size() > 0 && filename != "-" ) {
if ( ! exists( filename ) ) {
cerr << "file doesn't exist: " << filename << endl;
return -1;
}
in = &file;
fileSize = file_size( filename );
}
// check if we're actually talking to a machine that can write
if (!isMaster()) {
return -1;
}
string ns;
try {
ns = getNS();
}
catch (...) {
printHelp(cerr);
return -1;
}
log(1) << "ns: " << ns << endl;
auth();
if ( hasParam( "drop" ) ) {
cout << "dropping: " << ns << endl;
conn().dropCollection( ns.c_str() );
}
if ( hasParam( "ignoreBlanks" ) ) {
_ignoreBlanks = true;
}
if ( hasParam( "upsert" ) || hasParam( "upsertFields" )) {
_upsert = true;
string uf = getParam("upsertFields");
if (uf.empty()) {
_upsertFields.push_back("_id");
}
else {
StringSplitter(uf.c_str(), ",").split(_upsertFields);
}
}
if ( hasParam( "noimport" ) ) {
_doimport = false;
}
if ( hasParam( "type" ) ) {
string type = getParam( "type" );
if ( type == "json" )
_type = JSON;
else if ( type == "csv" ) {
_type = CSV;
_sep = ",";
}
else if ( type == "tsv" ) {
_type = TSV;
_sep = "\t";
}
else {
cerr << "don't know what type [" << type << "] is" << endl;
return -1;
}
}
if ( _type == CSV || _type == TSV ) {
_headerLine = hasParam( "headerline" );
if ( ! _headerLine )
needFields();
}
if (_type == JSON && hasParam("jsonArray")) {
_jsonArray = true;
}
time_t start = time(0);
log(1) << "filesize: " << fileSize << endl;
ProgressMeter pm( fileSize );
int num = 0;
int errors = 0;
int len = 0;
// buffer and line are only used when parsing a jsonArray
boost::scoped_array<char> buffer(new char[BUF_SIZE+2]);
char* line = buffer.get();
while ( _jsonArray || in->rdstate() == 0 ) {
try {
BSONObj o;
if (_jsonArray) {
int bytesProcessed = 0;
if (line == buffer.get()) { // Only read on first pass - the whole array must be on one line.
bytesProcessed = getLine(in, line);
line += bytesProcessed;
len += bytesProcessed;
}
if ((bytesProcessed = parseJSONArray(line, o)) < 0) {
len += bytesProcessed;
break;
}
len += bytesProcessed;
line += bytesProcessed;
}
else {
if (!parseRow(in, o, len)) {
continue;
}
}
if ( _headerLine ) {
_headerLine = false;
}
else if (_doimport) {
bool doUpsert = _upsert;
BSONObjBuilder b;
if (_upsert) {
for (vector<string>::const_iterator it=_upsertFields.begin(), end=_upsertFields.end(); it!=end; ++it) {
BSONElement e = o.getFieldDotted(it->c_str());
if (e.eoo()) {
doUpsert = false;
break;
}
b.appendAs(e, *it);
}
}
if (doUpsert) {
conn().update(ns, Query(b.obj()), o, true);
}
else {
conn().insert( ns.c_str() , o );
}
}
num++;
}
catch ( std::exception& e ) {
cout << "exception:" << e.what() << endl;
cout << line << endl;
errors++;
if (hasParam("stopOnError") || _jsonArray)
break;
}
if ( pm.hit( len + 1 ) ) {
cout << "\t\t\t" << num << "\t" << ( num / ( time(0) - start ) ) << "/second" << endl;
}
}
cout << "imported " << num << " objects" << endl;
conn().getLastError();
if ( errors == 0 )
return 0;
cerr << "encountered " << errors << " error" << ( errors == 1 ? "" : "s" ) << endl;
return -1;
}
};
int main( int argc , char ** argv ) {
Import import;
return import.main( argc , argv );
}
|