File: Compare_two_protein_structures.mop

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*
* Comapare two protein structures
*
* These two structures differ in that the order of the atoms is different, and the
* coordinates of atom 1 are different.
*
*  Note that the input files must not end in ".pdb" because the job will create new PDB files.
*
geo_dat="Structure-1.txt" geo_ref="Structure-2.txt" compare output
 Compare two very similar geometries (compare residue 10)