File: gmetry.f

package info (click to toggle)
mopac7 1.15-5
  • links: PTS, VCS
  • area: main
  • in suites: wheezy
  • size: 3,748 kB
  • sloc: fortran: 35,321; sh: 9,039; ansic: 417; makefile: 95
file content (237 lines) | stat: -rw-r--r-- 7,312 bytes parent folder | download | duplicates (8)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
      SUBROUTINE GMETRY(GEO,COORD)
      IMPLICIT DOUBLE PRECISION (A-H,O-Z)
      INCLUDE 'SIZES'
      COMMON /GEOKST/ NATOMS,LABELS(NUMATM),
     1NA(NUMATM),NB(NUMATM),NC(NUMATM)
     2       /EULER / TVEC(3,3), ID
      COMMON /REACTN/ STEP, GEOA(3,NUMATM), GEOVEC(3,NUMATM),COLCST
      COMMON /GEOOK/ IGEOOK
      COMMON /NUMCAL/ NUMCAL
      DIMENSION GEO(3,*),COORD(3,*)
      CHARACTER *15 NDIMEN(4)
      LOGICAL GEOOK
      SAVE ICALCN, NDIMEN, GEOOK
      DATA ICALCN/0/
      DATA NDIMEN/' MOLECULE     ',' POLYMER       ',
     1'LAYER STRUCTURE',' SOLID         '/
C***********************************************************************
C
C    GMETRY  COMPUTES COORDINATES FROM BOND-ANGLES AND LENGTHS.
C *** IT IS ADAPTED FROM THE PROGRAM WRITTEN BY M.J.S. DEWAR.
C
C     THREE SEPARATE OPTIONS EXIST WITHIN GMETRY. THESE ARE:
C    (A) IF NA(1) IS EQUAL TO 99 (IMPOSSIBLE UNDER NORMAL CIRCUMSTANCES)
C        THEN GEO IS ASSUMED TO BE IN CARTESIAN RATHER THAN INTERNAL
C        COORDINATES, AND COORD IS THEN SET EQUAL TO GEO.
C    (B) IF STEP IS NON-ZERO (THIS IS THE CASE WHEN "SADDLE" IS USED)
C        THEN GEO IS FIRST MODIFIED BY SHIFTING THE INTERNAL COORDINATES
C        ALONG A RADIUS FROM GEOA TO PLACE GEO AT ADISTANCESTEPFROMGEOA.
C    (C) NORMAL CONVERSION FROM INTERNAL TO CARTESIAN COORDINATESISDONE.
C
C  ON INPUT:
C         GEO    = ARRAY OF INTERNAL COORDINATES.
C         NATOMS = NUMBER OF ATOMS, INCLUDING DUMMIES.
C         NA     = ARRAY OF ATOM LABELS FOR BOND LENGTHS.
C
C  ON OUTPUT:
C         COORD  = ARRAY OF CARTESIAN COORDINATES
C
C***********************************************************************
C                                     OPTION (B)
      GEOOK=(IGEOOK.EQ.99)
      IF(ABS(STEP) .GT. 1.D-4) THEN
         SUM=0.D0
         DO 10 J=1,3
C$DOIT VBEST
            DO 10 I=1,NATOMS
               GEOVEC(J,I)=GEO(J,I)-GEOA(J,I)
   10    SUM=SUM+GEOVEC(J,I)**2
         SUM=SQRT(SUM)
         ERROR=(SUM-STEP)/SUM
      ELSE
         ERROR=0.D0
      ENDIF
      DO 20 J=1,3
C$DOIT VBEST
         DO 20 I=1,NATOMS
   20 GEO(J,I)=GEO(J,I)-ERROR*GEOVEC(J,I)
C                                     OPTION (A)
      IF(NA(1).EQ.99) THEN
         DO 30 I=1,3
C$DOIT VBEST
            DO 30 J=1,NATOMS
   30    COORD(I,J)=GEO(I,J)
         GOTO 100
      ENDIF
C                                     OPTION (C)
      COORD(1,1)=0.0D00
      COORD(2,1)=0.0D00
      COORD(3,1)=0.0D00
      COORD(1,2)=GEO(1,2)
      COORD(2,2)=0.0D00
      COORD(3,2)=0.0D00
      IF(NATOMS.EQ.2) GOTO 100
      CCOS=COS(GEO(2,3))
      IF(NA(3).EQ.1)THEN
         COORD(1,3)=COORD(1,1)+GEO(1,3)*CCOS
      ELSE
         COORD(1,3)=COORD(1,2)-GEO(1,3)*CCOS
      ENDIF
      COORD(2,3)=GEO(1,3)*SIN(GEO(2,3))
      COORD(3,3)=0.0D00
      DO 90 I=4,NATOMS
         COSA=COS(GEO(2,I))
         MB=NB(I)
         MC=NA(I)
         XB=COORD(1,MB)-COORD(1,MC)
         YB=COORD(2,MB)-COORD(2,MC)
         ZB=COORD(3,MB)-COORD(3,MC)
         RBC=XB*XB+YB*YB+ZB*ZB
         IF(RBC.LT.1.D-16)THEN
C
C     TWO ATOMS ARE COINCIDENT.  A FATAL ERROR.
C
            WRITE(6,'(A,I4,A,I4,A)')' ATOMS',MB,' AND',MC,' ARE COINCIDE
     1NT'
            WRITE(6,'(A)')' THIS IS A FATAL ERROR, RUN STOPPED IN GMETRY
     1'
            STOP
         ELSE
            RBC=1.0D00/SQRT(RBC)
         ENDIF
         MA=NC(I)
         XA=COORD(1,MA)-COORD(1,MC)
         YA=COORD(2,MA)-COORD(2,MC)
         ZA=COORD(3,MA)-COORD(3,MC)
C
C     ROTATE ABOUT THE Z-AXIS TO MAKE YB=0, AND XB POSITIVE.  IF XYB IS
C     TOO SMALL, FIRST ROTATE THE Y-AXIS BY 90 DEGREES.
C
         XYB=SQRT(XB*XB+YB*YB)
         K=-1
         IF (XYB.GT.0.1D00) GO TO 40
         XPA=ZA
         ZA=-XA
         XA=XPA
         XPB=ZB
         ZB=-XB
         XB=XPB
         XYB=SQRT(XB*XB+YB*YB)
         K=+1
C
C     ROTATE ABOUT THE Y-AXIS TO MAKE ZB VANISH
C
   40    COSTH=XB/XYB
         SINTH=YB/XYB
         XPA=XA*COSTH+YA*SINTH
         YPA=YA*COSTH-XA*SINTH
         SINPH=ZB*RBC
         COSPH=SQRT(ABS(1.D00-SINPH*SINPH))
         ZQA=ZA*COSPH-XPA*SINPH
C
C     ROTATE ABOUT THE X-AXIS TO MAKE ZA=0, AND YA POSITIVE.
C
         YZA=SQRT(YPA**2+ZQA**2)
         IF(YZA.LT.1.D-4)GOTO 60
         IF(YZA.LT.2.D-2 .AND. .NOT.GEOOK)THEN
            WRITE(6,'(//20X,'' CALCULATION ABANDONED AT THIS POINT'')')
            WRITE(6,'(//10X,'' THREE ATOMS BEING USED TO DEFINE THE'',/
     110X,'' COORDINATES OF A FOURTH ATOM, WHOSE BOND-ANGLE IS'')')
            WRITE(6,'(10X,'' NOT ZERO OR 180 DEGREEES, ARE '',
     1''IN AN ALMOST STRAIGHT'')')
            WRITE(6,'(10X,'' LINE.  THERE IS A HIGH PROBABILITY THAT THE
     1'',/10X,'' COORDINATES OF THE ATOM WILL BE INCORRECT.'')')
            WRITE(6,'(//20X,''THE FAULTY ATOM IS ATOM NUMBER'',I4)')I
            CALL GEOUT(1)
            WRITE(6,'(//20X,''CARTESIAN COORDINATES UP TO FAULTY ATOM'')
     1')
            WRITE(6,'(//5X,''I'',12X,''X'',12X,''Y'',12X,''Z'')')
            DO 50 J=1,I
   50       WRITE(6,'(I6,F16.5,2F13.5)')J,(COORD(K,J),K=1,3)
            WRITE(6,'(//6X,'' ATOMS'',I3,'','',I3,'', AND'',I3,
     1'' ARE WITHIN'',F7.4,'' ANGSTROMS OF A STRAIGHT LINE'')')
     2MC,MB,MA,YZA
            STOP
         ENDIF
         COSKH=YPA/YZA
         SINKH=ZQA/YZA
         GOTO 70
   60    CONTINUE
C
C   ANGLE TOO SMALL TO BE IMPORTANT
C
         COSKH=1.D0
         SINKH=0.D0
   70    CONTINUE
C
C     COORDINATES :-   A=(???,YZA,0),   B=(RBC,0,0),  C=(0,0,0)
C     NONE ARE NEGATIVE.
C     THE COORDINATES OF I ARE EVALUATED IN THE NEW FRAME.
C
         SINA=SIN(GEO(2,I))
         SIND=-SIN(GEO(3,I))
         COSD=COS(GEO(3,I))
         XD=GEO(1,I)*COSA
         YD=GEO(1,I)*SINA*COSD
         ZD=GEO(1,I)*SINA*SIND
C
C     TRANSFORM THE COORDINATES BACK TO THE ORIGINAL SYSTEM.
C
         YPD=YD*COSKH-ZD*SINKH
         ZPD=ZD*COSKH+YD*SINKH
         XPD=XD*COSPH-ZPD*SINPH
         ZQD=ZPD*COSPH+XD*SINPH
         XQD=XPD*COSTH-YPD*SINTH
         YQD=YPD*COSTH+XPD*SINTH
         IF (K.LT.1) GO TO 80
         XRD=-ZQD
         ZQD=XQD
         XQD=XRD
   80    COORD(1,I)=XQD+COORD(1,MC)
         COORD(2,I)=YQD+COORD(2,MC)
         COORD(3,I)=ZQD+COORD(3,MC)
   90 CONTINUE
C
C *** NOW REMOVE THE TRANSLATION VECTORS, IF ANY, FROM THE ARRAY COOR
C
  100 CONTINUE
      K=NATOMS
  110 IF(LABELS(K).NE.107) GOTO 120
      K=K-1
      GOTO 110
  120 K=K+1
      IF(K.GT.NATOMS) GOTO 170
C
C   SYSTEM IS A SOLID, OF DIMENSION NATOMS+1-K
C
      L=0
      DO 130 I=K,NATOMS
         L=L+1
         MC=NA(I)
         TVEC(1,L)=COORD(1,I)-COORD(1,MC)
         TVEC(2,L)=COORD(2,I)-COORD(2,MC)
         TVEC(3,L)=COORD(3,I)-COORD(3,MC)
  130 CONTINUE
      ID=L
      IF (ICALCN.NE.NUMCAL) THEN
         ICALCN=NUMCAL
         WRITE(6,140)NDIMEN(ID+1)
  140    FORMAT(/10X,'    THE SYSTEM IS A ',A15,/)
         IF(ID.EQ.0) GOTO 170
         WRITE(6,150)
         WRITE(6,160)(I,(TVEC(J,I),J=1,3),I=1,ID)
  150    FORMAT(/,'                UNIT CELL TRANSLATION VECTORS',/
     1/,'              X              Y              Z')
  160    FORMAT('    T',I1,' = ',F11.7,'    ',F11.7,'    ',F11.7)
      ENDIF
  170 CONTINUE
      J=0
      DO 190 I=1,NATOMS
         IF (LABELS(I).EQ.99.OR.LABELS(I).EQ.107) GO TO 190
         J=J+1
C$DOIT ASIS
         DO 180 K=1,3
  180    COORD(K,J)=COORD(K,I)
  190 CONTINUE
      RETURN
      END