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#!/usr/bin/make -f
DH_VERBOSE := 1
export LC_ALL=C.UTF-8
export HOME=/tmp
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
include /usr/share/dpkg/default.mk
%:
dh $@
override_dh_auto_build:
nim c --debuginfo:on -d:release -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/hts --nimcache:$(CURDIR)/nimcache mosdepth.nim
help2man --no-info --no-discard-stderr --help-option="-h" ./mosdepth > debian/mosdepth.1
rm -f tests/missing.bed
for f in debian/missing-sources/*; do \
outp=tests/`echo $$f | sed -e 's/sam/bam/' -e 's/debian\/missing\-sources\///'` ; \
cat $$f | samtools view -Sb - > $$outp ; \
if [ "$$outp" = "tests/big.bam" ] ; then \
samtools index $$outp -c ; \
continue ; \
fi ; \
samtools index $$outp ; \
done
override_dh_auto_clean:
rm -f debian/mosdepth.1
rm -f mosdepth
rm -rf nimcache
rm -f tests/big.bam.csi
rm -f tests/ovl.bam tests/ovl.bam.bai tests/overlapping-pairs.bam.bai tests/overlapping-pairs.bam tests/overlapping-pairs.bam tests/empty-tids.bam.bai tests/empty-tids.bam tests/big.bam tests/nanopore.bam tests/nanopore.bam.bai
override_dh_dwz:
dh_dwz || true
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