1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46
|
/*
* sharedmarczewski.cpp
* Mothur
*
* Created by Thomas Ryabin on 4/8/09.
* Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
*
*/
#include "sharedmarczewski.h"
EstOutput SharedMarczewski::getValues(vector<SharedRAbundVector*> vectorShared){
try {
SharedRAbundVector* shared1 = vectorShared[0];
SharedRAbundVector* shared2 = vectorShared[1];
data.resize(1,0);
double a = 0;
double b = 0;
double c = 0;
for(int i = 1; i < shared1->size(); i++)
{
int abund1 = shared1->get(i).abundance;
int abund2 = shared2->get(i).abundance;
if(abund1 > 0 && abund2 > 0)
a++;
else if(abund1 > 0 && abund2 == 0)
b++;
else if(abund1 == 0 && abund2 > 0)
c++;
}
data[0] = (b+c)/(a+b+c);
if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
return data;
}
catch(exception& e) {
m->errorOut(e, "SharedMarczewski", "getValues");
exit(1);
}
}
/***********************************************************************/
|