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#ifndef SHAREDUTIL_H
#define SHAREDUTIL_H
/*
* sharedutilities.h
* Mothur
*
* Created by Sarah Westcott on 4/9/09.
* Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
*
*/
#include "mothur.h"
#include "mothurout.h"
class SharedRAbundVector;
class SharedOrderVector;
/**************************************************************************************************/
class SharedUtil {
public:
SharedUtil() { m = MothurOut::getInstance(); }
~SharedUtil() {};
void getSharedVectors(vector<string>, vector<SharedRAbundVector*>&, SharedOrderVector*);
void getSharedVectorswithReplacement(vector<string>, vector<SharedRAbundVector*>&, SharedOrderVector*);
void setGroups(vector<string>&, vector<string>&); //globaldata->Groups, your tree or group map
void setGroups(vector<string>&, vector<string>&, string); //globaldata->Groups, your tree or group map, mode
void setGroups(vector<string>&, vector<string>&, string&, int&, string); //globaldata->Groups, your tree or group map, allgroups, numGroups, mode
void getCombos(vector<string>&, vector<string>, int&); //groupcomb, globaldata->Groups, numcomb
void updateGroupIndex(vector<string>&, map<string, int>&); //globaldata->Groups, groupmap->groupIndex
bool isValidGroup(string, vector<string>);
private:
MothurOut* m;
};
/**************************************************************************************************/
#endif
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