File: regularizedrandomforest.cpp

package info (click to toggle)
mothur 1.33.3%2Bdfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: jessie, jessie-kfreebsd
  • size: 11,248 kB
  • ctags: 12,231
  • sloc: cpp: 152,046; fortran: 665; makefile: 74; sh: 34
file content (63 lines) | stat: -rw-r--r-- 1,679 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
//
//  regularizedrandomforest.cpp
//  Mothur
//
//  Created by Kathryn Iverson on 11/16/12.
//  Copyright (c) 2012 Schloss Lab. All rights reserved.
//

#include "regularizedrandomforest.h"

RegularizedRandomForest::RegularizedRandomForest(const vector <vector<int> > dataSet,
                                                 const int numDecisionTrees,
                                                 const string treeSplitCriterion = "gainratio")
                        // TODO: update ctor according to basic RandomForest Class
                      : Forest(dataSet,
                               numDecisionTrees,
                               treeSplitCriterion,
                               false, 0.9, true, 0.4, "log2", 0.0) {
    m = MothurOut::getInstance();
}

int RegularizedRandomForest::calcForrestErrorRate() {
    //
    try {
        return 0;
    }
    catch(exception& e) {
		m->errorOut(e, "RegularizedRandomForest", "calcForrestErrorRate");
		exit(1);
	}
}

int RegularizedRandomForest::calcForrestVariableImportance(string filename) {
    //
    try {
        return 0;
    }
    catch(exception& e) {
		m->errorOut(e, "RegularizedRandomForest", "calcForrestVariableImportance");
		exit(1);
	}
}

int RegularizedRandomForest::populateDecisionTrees() {
    //
    try {
        return 0;
    }
    catch(exception& e) {
		m->errorOut(e, "RegularizedRandomForest", "populateDecisionTrees");
		exit(1);
	}
}

int RegularizedRandomForest::updateGlobalOutOfBagEstimates(DecisionTree *decisionTree) {
    try {
        return 0;
    }
    catch(exception& e) {
		m->errorOut(e, "RegularizedRandomForest", "updateGlobalOutOfBagEstimates");
		exit(1);
	}
}