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/*
* reportfile.cpp
* Mothur
*
* Created by Pat Schloss on 12/19/10.
* Copyright 2010 Schloss Lab. All rights reserved.
*
*/
#include "mothur.h"
#include "mothurout.h"
#include "reportfile.h"
/**************************************************************************************************/
ReportFile::ReportFile(){
try {
m = MothurOut::getInstance();
}
catch(exception& e) {
m->errorOut(e, "ReportFile", "ReportFile");
exit(1);
}
}
/**************************************************************************************************/
ReportFile::ReportFile(ifstream& repFile, string repFileName){
try {
m = MothurOut::getInstance();
m->openInputFile(repFileName, repFile);
m->getline(repFile);
}
catch(exception& e) {
m->errorOut(e, "ReportFile", "ReportFile");
exit(1);
}
}
/**************************************************************************************************/
ReportFile::ReportFile(ifstream& repFile){
try {
m = MothurOut::getInstance();
repFile >> queryName;
repFile >> queryLength;
repFile >> templateName;
repFile >> templateLength;
repFile >> searchMethod;
repFile >> dummySearchScore;
repFile >> alignmentMethod;
repFile >> queryStart;
repFile >> queryEnd;
repFile >> templateStart;
repFile >> templateEnd;
repFile >> pairwiseAlignmentLength;
repFile >> gapsInQuery;
repFile >> gapsInTemplate;
repFile >> longestInsert;
repFile >> simBtwnQueryAndTemplate;
if(dummySearchScore != "nan"){
istringstream stream(dummySearchScore);
stream >> searchScore;
}
else{
searchScore = 0;
}
m->gobble(repFile);
}
catch(exception& e) {
m->errorOut(e, "ReportFile", "ReportFile");
exit(1);
}
}
/**************************************************************************************************/
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