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#ifndef REVERSECOMMAND_H
#define REVERSECOMMAND_H
/*
* reversecommand.h
* Mothur
*
* Created by Pat Schloss on 6/6/09.
* Copyright 2009 Patrick D. Schloss. All rights reserved.
*
*/
#include "command.hpp"
class ReverseSeqsCommand : public Command {
public:
ReverseSeqsCommand(string);
ReverseSeqsCommand();
~ReverseSeqsCommand() {}
vector<string> setParameters();
string getCommandName() { return "reverse.seqs"; }
string getCommandCategory() { return "Sequence Processing"; }
string getHelpString();
string getOutputPattern(string);
string getCitation() { return "http://www.mothur.org/wiki/Reverse.seqs"; }
string getDescription() { return "outputs a fasta file containing the reverse-complements"; }
int execute();
void help() { m->mothurOut(getHelpString()); }
private:
bool abort;
string fastaFileName, qualFileName, outputDir;
vector<string> outputNames;
};
#endif
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