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/*
* sharedjest.cpp
* Dotur
*
* Created by Sarah Westcott on 1/8/09.
* Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
*
*/
#include "sharedchao1.h"
#include "chao1.h"
#include "sharedjest.h"
/***********************************************************************/
EstOutput Jest::getValues(vector<SharedRAbundVector*> shared) {
try {
EstOutput S1, S2, S12;
S12.resize(1,0);
S1.resize(3,0);
S2.resize(3,0);
/*S1, S2 = number of OTUs estimated in A and B using the Chao estimator
S12 = estimated number of OTUs shared between A and B using the SharedChao estimator*/
data.resize(1,0);
SharedChao1* sharedChao = new SharedChao1();
Chao1* chaoS1 = new Chao1();
Chao1* chaoS2 = new Chao1();
SAbundVector* chaoS1Sabund = new SAbundVector();
SAbundVector* chaoS2Sabund = new SAbundVector();
*chaoS1Sabund = shared[0]->getSAbundVector();
*chaoS2Sabund = shared[1]->getSAbundVector();
//chaoS1Sabund->print(cout);
//chaoS2Sabund->print(cout);
S12 = sharedChao->getValues(shared);
S1 = chaoS1->getValues(chaoS1Sabund);
S2 = chaoS2->getValues(chaoS2Sabund);
//cout << S12[0] << '\t' << S1[0] << '\t' << S2[0] << endl;
data[0] = 1.0 - S12[0] / (float)(S1[0] + S2[0] - S12[0]);
//cout << data[0] << endl;
if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
delete sharedChao;
delete chaoS1;
delete chaoS2;
delete chaoS1Sabund;
delete chaoS2Sabund;
return data;
}
catch(exception& e) {
m->errorOut(e, "Jest", "getValues");
exit(1);
}
}
/***********************************************************************/
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