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#ifndef SHAREDSABUND_H
#define SHAREDSABUND_H
/*
* sharedSharedSAbundVector.h
* Dotur
*
* Created by Sarah Westcott on 12/10/08.
* Copyright 2008 Schloss Lab UMASS Amherst. All rights reserved.
*
*/
#include "datavector.hpp"
#include "rabundvector.hpp"
#include "ordervector.hpp"
#include "sharedordervector.h"
#include "sharedrabundvector.h"
/* This class is a child to datavector. It represents OTU information at a certain distance.
It is similiar to an sabundvector except each member of data knows which group it belongs to.
Each member of the internal container "data" is a struct of type individual.
An individual which knows the OTU from which it came,
the group it is in and its abundance. */
class SharedSAbundVector : public DataVector {
public:
SharedSAbundVector();
SharedSAbundVector(int);
SharedSAbundVector(const SharedSAbundVector& rv) : DataVector(rv.label), data(rv.data), maxRank(rv.maxRank), numBins(rv.numBins), numSeqs(rv.numSeqs){};
~SharedSAbundVector(){};
int getNumBins();
int getNumSeqs();
int getMaxRank();
string getGroup();
void setGroup(string);
void set(int, int, string); //OTU, abundance, group
individual get(int);
int getAbundance(int);
void push_back(int, int, string); //abundance, OTU, group
void pop_back();
void resize(int);
int size();
void clear();
void print(ostream&);
RAbundVector getRAbundVector();
SAbundVector getSAbundVector();
OrderVector getOrderVector(map<string,int>*);
SharedSAbundVector getSharedSAbundVector();
SharedRAbundVector getSharedRAbundVector();
SharedOrderVector getSharedOrderVector();
private:
vector<individual> data;
int maxRank;
int numBins;
int numSeqs;
string group;
};
#endif
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