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/*
* sharedsobs.cpp
* Dotur
*
* Created by Sarah Westcott on 1/7/09.
* Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
*
*/
#include "sharedsobs.h"
/***********************************************************************/
//This returns the number of unique species observed in several groups.
//The shared vector is each groups sharedrabundvector.
EstOutput SharedSobs::getValues(vector<SharedRAbundVector*> shared){
try {
data.resize(1,0);
double observed = 0;
//loop through the species in each group
for (int k = 0; k < shared[0]->getNumBins(); k++) {
//if you have found a new species
if (shared[0]->getAbundance(k) != 0) { observed++; }
else if ((shared[0]->getAbundance(k) == 0) && (shared[1]->getAbundance(k) != 0)) { observed++; }
}
data[0] = observed;
return data;
}
catch(exception& e) {
m->errorOut(e, "SharedSobs", "getValues");
exit(1);
}
}
/***********************************************************************/
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