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#ifndef SYSTEMCOMMAND_H
#define SYSTEMCOMMAND_H
/*
* systemcommand.h
* Mothur
*
* Created by Sarah Westcott on 7/8/09.
* Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
*
*/
#include "command.hpp"
class SystemCommand : public Command {
public:
SystemCommand(string);
SystemCommand() { setParameters(); abort = true; calledHelp = true; }
~SystemCommand(){}
vector<string> setParameters();
string getCommandName() { return "system"; }
string getCommandCategory() { return "General"; }
string getHelpString();
string getOutputPattern(string){ return ""; }
string getCitation() { return "http://www.mothur.org/wiki/System"; }
string getDescription() { return "execute system commands from within mothur"; }
int execute();
void help() { m->mothurOut(getHelpString()); }
private:
string command;
bool abort;
vector<string> outputNames;
};
#endif
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