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mothur 1.41.21-1
  • links: PTS, VCS
  • area: main
  • in suites: bullseye, buster, sid
  • size: 12,892 kB
  • sloc: cpp: 163,600; makefile: 84; sh: 29

Folder: source

d .. (parent)
d d rwxr-xr-x 8,192 calculators
d d rwxr-xr-x 4,096 chimera
d d rwxr-xr-x 4,096 classifier
d d rwxr-xr-x 4,096 clearcut
d d rwxr-xr-x 12,288 commands
d d rwxr-xr-x 4,096 communitytype
d d rwxr-xr-x 4,096 datastructures
d d rwxr-xr-x 120 metastats
d d rwxr-xr-x 4,096 randomforest
d d rwxr-xr-x 4,096 read
d d rwxr-xr-x 46 svm
d d rwxr-xr-x 4,096 uchime_src
- - rwxr-xr-x 1,391 averagelinkage.cpp
- - rwxr-xr-x 10,737 calcsparcc.cpp
- - rwxr-xr-x 1,488 calcsparcc.h
- - rwxr-xr-x 12,185 checked.h
- - rwxr-xr-x 8,343 cluster.cpp
- - rwxr-xr-x 2,431 cluster.hpp
- - rwxr-xr-x 18,253 clusterclassic.cpp
- - rwxr-xr-x 1,182 clusterclassic.h
- - rwxr-xr-x 8,012 collect.cpp
- - rwxr-xr-x 1,008 collect.h
- - rwxr-xr-x 3,161 collectdisplay.h
- - rwxr-xr-x 2,327 collectorscurvedata.h
- - rwxr-xr-x 66,014 commandfactory.cpp
- - rwxr-xr-x 1,192 commandfactory.hpp
- - rwxr-xr-x 2,572 commandoptionparser.cpp
- - rwxr-xr-x 573 commandoptionparser.hpp
- - rwxr-xr-x 3,726 commandparameter.h
- - rwxr-xr-x 978 completelinkage.cpp
- - rwxr-xr-x 12,289 consensus.cpp
- - rwxr-xr-x 2,249 consensus.h
- - rwxr-xr-x 10,750 core.h
- - rwxr-xr-x 13,317 currentfile.cpp
- - rwxr-xr-x 9,110 currentfile.h
- - rwxr-xr-x 866 display.h
- - rwxr-xr-x 2,054 dlibshuff.cpp
- - rwxr-xr-x 483 dlibshuff.h
- - rwxr-xr-x 4,652 endiannessmacros.h
- - rwxr-xr-x 13,600 engine.cpp
- - rwxr-xr-x 1,248 engine.hpp
- - rwxr-xr-x 6,725 fileoutput.cpp
- - rwxr-xr-x 2,515 fileoutput.h
- - rwxr-xr-x 3,769 gotohoverlap.cpp
- - rwxr-xr-x 1,411 gotohoverlap.hpp
- - rwxr-xr-x 26,497 heatmap.cpp
- - rwxr-xr-x 2,297 heatmap.h
- - rwxr-xr-x 8,559 heatmapsim.cpp
- - rwxr-xr-x 812 heatmapsim.h
- - rwxr-xr-x 27,851 inputdata.cpp
- - rwxr-xr-x 1,812 inputdata.h
- - rwxr-xr-x 3,626 libshuff.cpp
- - rwxr-xr-x 934 libshuff.h
- - rwxr-xr-x 81,483 linearalgebra.cpp
- - rwxr-xr-x 3,756 linearalgebra.h
- - rwxr-xr-x 7,607 mothur.cpp
- - rwxr-xr-x 14,476 mothur.h
- - rwxr-xr-x 15,055 mothurout.cpp
- - rwxr-xr-x 3,890 mothurout.h
- - rwxr-xr-x 11,709 myseqdist.cpp
- - rwxr-xr-x 808 myseqdist.h
- - rwxr-xr-x 15,555 nast.cpp
- - rwxr-xr-x 1,342 nast.hpp
- - rwxr-xr-x 6,843 nastreport.cpp
- - rwxr-xr-x 1,220 nastreport.hpp
- - rwxr-xr-x 8,186 needlemanoverlap.cpp
- - rwxr-xr-x 1,377 needlemanoverlap.hpp
- - rwxr-xr-x 721 noalign.cpp
- - rwxr-xr-x 529 noalign.hpp
- - rwxr-xr-x 392 observable.h
- - rwxr-xr-x 12,550 opticluster.cpp
- - rwxr-xr-x 2,460 opticluster.h
- - rw-r--r-- 32,338 optifitcluster.cpp
- - rw-r--r-- 2,523 optifitcluster.hpp
- - rwxr-xr-x 9,632 optionparser.cpp
- - rwxr-xr-x 767 optionparser.h
- - rwxr-xr-x 2,843 overlap.cpp
- - rwxr-xr-x 1,241 overlap.hpp
- - rwxr-xr-x 9,263 randomnumber.cpp
- - rwxr-xr-x 786 randomnumber.h
- - rwxr-xr-x 2,996 raredisplay.cpp
- - rwxr-xr-x 1,091 raredisplay.h
- - rwxr-xr-x 10,081 rarefact.cpp
- - rwxr-xr-x 1,038 rarefact.h
- - rwxr-xr-x 1,787 rarefactioncurvedata.h
- - rwxr-xr-x 19,944 refchimeratest.cpp
- - rwxr-xr-x 1,526 refchimeratest.h
- - rwxr-xr-x 2,801 sensspeccalc.cpp
- - rwxr-xr-x 569 sensspeccalc.hpp
- - rwxr-xr-x 25,994 seqnoise.cpp
- - rwxr-xr-x 2,947 seqnoise.h
- - rwxr-xr-x 1,256 sharedwriter.hpp
- - rwxr-xr-x 945 singlelinkage.cpp
- - rwxr-xr-x 2,379 slibshuff.cpp
- - rwxr-xr-x 428 slibshuff.h
- - rwxr-xr-x 18,847 subsample.cpp
- - rwxr-xr-x 2,290 subsample.h
- - rwxr-xr-x 47,664 summary.cpp
- - rwxr-xr-x 8,480 summary.hpp
- - rwxr-xr-x 11,295 trialSwap2.cpp
- - rwxr-xr-x 1,077 trialswap2.h
- - rw-r--r-- 138,389 trimoligos.cpp
- - rwxr-xr-x 3,663 trimoligos.h
- - rwxr-xr-x 8,907 unchecked.h
- - rwxr-xr-x 1,511 utf8.h
- - rw-r--r-- 170,202 utils.cpp
- - rwxr-xr-x 11,820 utils.hpp
- - rwxr-xr-x 40,249 validcalculator.cpp
- - rwxr-xr-x 1,575 validcalculator.h
- - rwxr-xr-x 12,692 validparameter.cpp
- - rwxr-xr-x 1,145 validparameter.h
- - rwxr-xr-x 71,667 venn.cpp
- - rwxr-xr-x 752 venn.h
- - rwxr-xr-x 8,684 vsearchfileparser.cpp
- - rwxr-xr-x 1,756 vsearchfileparser.h
- - rwxr-xr-x 1,384 weightedlinkage.cpp
- - rwxr-xr-x 7,474 wilcox.cpp
- - rwxr-xr-x 609 wilcox.h
- - rwxr-xr-x 597 writer.h