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#ifndef COMMANDOPTIONPARSER_HPP
#define COMMANDOPTIONPARSER_HPP
#include "mothur.h"
#include "mothurout.h"
#include "currentfile.h"
//**********************************************************************************************************************
class CommandOptionParser {
public:
CommandOptionParser(string);
string getCommandString();
string getOptionString();
private:
string commandString, optionString;
MothurOut* m;
};
//**********************************************************************************************************************
#endif
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