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mothur 1.44.3-2
  • links: PTS, VCS
  • area: main
  • in suites: bullseye
  • size: 13,328 kB
  • sloc: cpp: 158,612; makefile: 119; sh: 10

Folder: source

d .. (parent)
d d rwxr-xr-x 8,192 calculators
d d rwxr-xr-x 4,096 chimera
d d rwxr-xr-x 4,096 classifier
d d rwxr-xr-x 4,096 clearcut
d d rwxr-xr-x 12,288 commands
d d rwxr-xr-x 4,096 communitytype
d d rwxr-xr-x 4,096 datastructures
d d rwxr-xr-x 4,096 engines
d d rwxr-xr-x 120 metastats
d d rwxr-xr-x 4,096 read
d d rwxr-xr-x 46 svm
d d rwxr-xr-x 4,096 uchime_src
- - rwxr-xr-x 1,391 averagelinkage.cpp
- - rwxr-xr-x 10,737 calcsparcc.cpp
- - rwxr-xr-x 1,488 calcsparcc.h
- - rwxr-xr-x 12,185 checked.h
- - rwxr-xr-x 8,183 cluster.cpp
- - rwxr-xr-x 2,431 cluster.hpp
- - rwxr-xr-x 17,824 clusterclassic.cpp
- - rwxr-xr-x 1,184 clusterclassic.h
- - rwxr-xr-x 5,345 collect.cpp
- - rwxr-xr-x 1,020 collect.h
- - rwxr-xr-x 3,522 collectdisplay.h
- - rwxr-xr-x 2,760 collectorscurvedata.h
- - rw-r--r-- 51,212 commandfactory.cpp
- - rwxr-xr-x 1,123 commandfactory.hpp
- - rwxr-xr-x 2,531 commandoptionparser.cpp
- - rwxr-xr-x 573 commandoptionparser.hpp
- - rwxr-xr-x 3,726 commandparameter.h
- - rwxr-xr-x 978 completelinkage.cpp
- - rwxr-xr-x 12,289 consensus.cpp
- - rwxr-xr-x 2,249 consensus.h
- - rwxr-xr-x 10,750 core.h
- - rwxr-xr-x 16,542 currentfile.cpp
- - rwxr-xr-x 13,659 currentfile.h
- - rwxr-xr-x 943 display.h
- - rwxr-xr-x 2,054 dlibshuff.cpp
- - rwxr-xr-x 483 dlibshuff.h
- - rwxr-xr-x 4,652 endiannessmacros.h
- - rwxr-xr-x 6,994 fileoutput.cpp
- - rwxr-xr-x 2,837 fileoutput.h
- - rwxr-xr-x 3,802 gotohoverlap.cpp
- - rwxr-xr-x 1,437 gotohoverlap.hpp
- - rwxr-xr-x 27,036 heatmap.cpp
- - rwxr-xr-x 2,233 heatmap.h
- - rwxr-xr-x 8,891 heatmapsim.cpp
- - rwxr-xr-x 834 heatmapsim.h
- - rwxr-xr-x 30,635 inputdata.cpp
- - rwxr-xr-x 1,935 inputdata.h
- - rwxr-xr-x 3,626 libshuff.cpp
- - rwxr-xr-x 934 libshuff.h
- - rwxr-xr-x 81,403 linearalgebra.cpp
- - rwxr-xr-x 3,756 linearalgebra.h
- - rwxr-xr-x 5,185 mothur.cpp
- - rw-r--r-- 17,302 mothur.h
- - rwxr-xr-x 18,482 mothurout.cpp
- - rwxr-xr-x 4,317 mothurout.h
- - rwxr-xr-x 11,724 myseqdist.cpp
- - rwxr-xr-x 808 myseqdist.h
- - rwxr-xr-x 15,535 nast.cpp
- - rwxr-xr-x 1,342 nast.hpp
- - rwxr-xr-x 6,843 nastreport.cpp
- - rwxr-xr-x 1,220 nastreport.hpp
- - rwxr-xr-x 8,184 needlemanoverlap.cpp
- - rwxr-xr-x 1,403 needlemanoverlap.hpp
- - rwxr-xr-x 741 noalign.cpp
- - rwxr-xr-x 549 noalign.hpp
- - rwxr-xr-x 392 observable.h
- - rwxr-xr-x 12,511 opticluster.cpp
- - rwxr-xr-x 2,456 opticluster.h
- - rw-r--r-- 32,205 optifitcluster.cpp
- - rw-r--r-- 2,504 optifitcluster.hpp
- - rwxr-xr-x 14,302 optionparser.cpp
- - rwxr-xr-x 892 optionparser.h
- - rwxr-xr-x 2,843 overlap.cpp
- - rwxr-xr-x 1,241 overlap.hpp
- - rwxr-xr-x 2,940 raredisplay.cpp
- - rwxr-xr-x 1,030 raredisplay.h
- - rwxr-xr-x 9,993 rarefact.cpp
- - rwxr-xr-x 1,038 rarefact.h
- - rwxr-xr-x 1,592 rarefactioncurvedata.h
- - rwxr-xr-x 19,950 refchimeratest.cpp
- - rwxr-xr-x 1,526 refchimeratest.h
- - rwxr-xr-x 2,783 sensspeccalc.cpp
- - rwxr-xr-x 557 sensspeccalc.hpp
- - rwxr-xr-x 26,006 seqnoise.cpp
- - rwxr-xr-x 2,947 seqnoise.h
- - rwxr-xr-x 1,256 sharedwriter.hpp
- - rwxr-xr-x 945 singlelinkage.cpp
- - rwxr-xr-x 2,379 slibshuff.cpp
- - rwxr-xr-x 428 slibshuff.h
- - rwxr-xr-x 39,680 subsample.cpp
- - rwxr-xr-x 4,309 subsample.h
- - rwxr-xr-x 47,045 summary.cpp
- - rwxr-xr-x 8,480 summary.hpp
- - rwxr-xr-x 11,275 trialSwap2.cpp
- - rwxr-xr-x 1,077 trialswap2.h
- - rw-r--r-- 152,855 trimoligos.cpp
- - rwxr-xr-x 3,759 trimoligos.h
- - rwxr-xr-x 8,907 unchecked.h
- - rwxr-xr-x 1,511 utf8.h
- - rw-r--r-- 221,203 utils.cpp
- - rw-r--r-- 14,935 utils.hpp
- - rwxr-xr-x 34,856 validcalculator.cpp
- - rwxr-xr-x 1,490 validcalculator.h
- - rw-r--r-- 12,489 validparameter.cpp
- - rwxr-xr-x 1,075 validparameter.h
- - rwxr-xr-x 71,691 venn.cpp
- - rwxr-xr-x 752 venn.h
- - rwxr-xr-x 8,684 vsearchfileparser.cpp
- - rwxr-xr-x 1,756 vsearchfileparser.h
- - rwxr-xr-x 1,384 weightedlinkage.cpp
- - rwxr-xr-x 7,474 wilcox.cpp
- - rwxr-xr-x 609 wilcox.h
- - rwxr-xr-x 597 writer.h