File: run-unit-test

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mothur 1.48.1-1
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#!/bin/sh -e

pkg=mothur

if [ "$AUTOPKGTEST_TMP" = "" ] ; then
  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi

cd $AUTOPKGTEST_TMP

cp -a /usr/share/doc/${pkg}/HA.fasta* .
cp -a /usr/share/doc/${pkg}/test.batch* .
gunzip -r *

mothur test.batch