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#bin.seqs
# NOTE: download TestReferences and TestFiles and put in same location as mothur executable
#Test files -> final.fasta, final.names, final.count_table, final.groups from MiSeq_SOP
set.dir(input=./TestFiles, output=./binseqs, tempdefault=./TestReferences)
set.logfile(name=binseqs.logfile)
bin.seqs(fasta=final2.fasta, name=final.names, list=final2.opti_mcc.list)
bin.seqs(fasta=final2.fasta, name=final.names, group=final.groups, list=final2.opti_mcc.list)
bin.seqs(fasta=final.fasta, list=final.opti_mcc.list)
bin.seqs(fasta=final.fasta, count=final.count_table, list=final.opti_mcc.list)
quit()
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