File: batch

package info (click to toggle)
mothur 1.48.5-1
  • links: PTS, VCS
  • area: main
  • in suites: forky
  • size: 13,684 kB
  • sloc: cpp: 161,854; makefile: 122; sh: 31
file content (9 lines) | stat: -rw-r--r-- 438 bytes parent folder | download | duplicates (4) 
1
2
3
4
5
6
7
8
9
 
#summary.seqs
# NOTE: download TestReferences and TestFiles and put in same location as mothur executable
# final.fasta, final.names, final.count from MISeq_SOP
set.dir(input=./TestFiles, output=./TestResults/summary.seqs, tempdefault=./TestReferences)
set.logfile(name=summaryseqs.logfile)
summary.seqs(fasta=final.fasta)
summary.seqs(fasta=final2.fasta, name=final.names)
summary.seqs(fasta=final.fasta, count=final.count_table)
quit()