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//
// fakeoptimatrix.cpp
// Mothur
//
// Created by Sarah Westcott on 4/20/17.
// Copyright © 2017 Schloss Lab. All rights reserved.
//
#include "fakeoptimatrix.hpp"
/***********************************************************************/
FakeOptiMatrix::FakeOptiMatrix() : OptiData(0.03) {
try {
m = MothurOut::getInstance();
//create 10 singletons
for (int i = 90; i < 100; i++) { singletons.push_back(toString(i)); }
//create 90 non singletons
for (int i = 0; i < 90; i++) { nameMap.push_back(toString(i)); }
closeness.resize(90);
int count = 0;
for (int i = 0; i < 9; i++) {
set<int> close;
//create list of all sequences in this set
for (int j = 0; j < 10; j++) { close.insert((j+count)); }
for (set<int>::iterator it = close.begin(); it != close.end(); it++) {
//add close sequences to each sequence in this set, do not include self
for (int j = 0; j < 10; j++) { if ((j+count) != *it) { closeness[j+count].insert(*it); } }
}
count += 10;
}
}
catch(exception& e) {
m->errorOut(e, "FakeOptiMatrix", "FakeOptiMatrix");
exit(1);
}
}
/***********************************************************************/
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