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/*
* memeuclidean.cpp
* Mothur
*
* Created by westcott on 12/17/10.
* Copyright 2010 Schloss Lab. All rights reserved.
*
*/
#include "memeuclidean.h"
/***********************************************************************/
EstOutput MemEuclidean::getValues(vector<SharedRAbundVector*> shared) {
try {
data.resize(1,0);
double sum = 0.0;
for (int i = 0; i < shared[0]->getNumBins(); i++) {
int A = shared[0]->get(i);
int B = shared[1]->get(i);
if (A > 0) { A = 1; }
if (B > 0) { B = 1; }
sum += ((A-B)*(A-B));
}
data[0] = sqrt(sum);
if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
return data;
}
catch(exception& e) {
m->errorOut(e, "MemEuclidean", "getValues");
exit(1);
}
}
/***********************************************************************/
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