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/*
* soergel.cpp
* Mothur
*
* Created by westcott on 12/15/10.
* Copyright 2010 Schloss Lab. All rights reserved.
*
*/
#include "soergel.h"
/***********************************************************************/
EstOutput Soergel::getValues(vector<SharedRAbundVector*> shared) {
try {
data.resize(1,0);
double sumNum = 0.0;
double sumMax = 0.0;
//calc the 2 denominators
for (int i = 0; i < shared[0]->getNumBins(); i++) {
int Aij = shared[0]->get(i);
int Bij = shared[1]->get(i);
sumNum += abs((Aij - Bij));
sumMax += max(Aij, Bij);
}
data[0] = sumNum / sumMax;
if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
return data;
}
catch(exception& e) {
m->errorOut(e, "Soergel", "getValues");
exit(1);
}
}
/***********************************************************************/
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