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#ifndef GETGROUPCOMMAND_H
#define GETGROUPCOMMAND_H
/*
* getgroupcommand.h
* Mothur
*
* Created by Thomas Ryabin on 2/2/09.
* Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
*
*/
#include "command.hpp"
class GetgroupCommand : public Command {
public:
GetgroupCommand(string);
~GetgroupCommand() = default;
vector<string> setParameters();
string getCommandName() { return "get.group"; }
string getCommandCategory() { return "OTU-Based Approaches"; }
string getHelpString();
string getOutputPattern(string) { return ""; }
string getCitation() { return "http://www.mothur.org/wiki/Get.group"; }
string getDescription() { return "outputs group names"; }
int execute();
void help() { m->mothurOut(getHelpString()); }
private:
string outputFile, sharedfile;
vector<string> outputNames;
ofstream out;
ifstream in;
bool abort;
};
#endif
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