1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
|
//
// proteindb.hpp
// Mothur
//
// Created by Sarah Westcott on 6/3/21.
// Copyright © 2021 Schloss Lab. All rights reserved.
//
#ifndef proteindb_hpp
#define proteindb_hpp
#include "protein.hpp"
#include "storagedatabase.hpp"
class ProteinDB : public StorageDatabase {
public:
ProteinDB();
ProteinDB(int); //makes data that size
ProteinDB(ifstream&); //reads file to fill data
ProteinDB(const ProteinDB& sdb) : data(sdb.data) {};
~ProteinDB(); //loops through data and delete each protein sequence
Protein getProt(int); //returns sequence name at that location
void push_back(Protein); //adds unaligned sequence
void print(string); //prints fasta file containing sequences in this db
int getNumSeqs();
private:
vector<Protein> data;
};
#endif /* proteindb_hpp */
|
