1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
|
//
// storagedatabase.hpp
// Mothur
//
// Created by Sarah Westcott on 6/3/21.
// Copyright © 2021 Schloss Lab. All rights reserved.
//
#ifndef storagedatabase_hpp
#define storagedatabase_hpp
#include "mothurout.h"
#include "sequence.hpp"
#include "protein.hpp"
class StorageDatabase {
public:
StorageDatabase() { m = MothurOut::getInstance(); length = 0; samelength = true; }
virtual ~StorageDatabase() = default; //loops through data and delete each sequence
virtual int getNumSeqs() = 0;
virtual void print(string) = 0;
virtual bool sameLength() { return samelength; }
virtual Sequence getSeq(int) { Sequence s; return s; }
virtual Protein getProt(int) { Protein p; return p; }
virtual void push_back(Sequence) {} //adds sequence
virtual void push_back(Protein) {} //adds protein
protected:
MothurOut* m;
Utils util;
bool samelength;
int length;
};
#endif /* storagedatabase_hpp */
|
