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#ifndef FILEOUTPUT_H
#define FILEOUTPUT_H
#include "mothurout.h"
#include "utils.hpp"
/***********************************************************************/
class FileOutput {
public:
FileOutput(string n){ m = MothurOut::getInstance(); fileHeader = ""; filename = n; firstLabel = true; }
virtual ~FileOutput(){ printFile(); }
virtual void setLabelName(string) {}
virtual void updateOutput(int, vector<double>) {}
virtual void resetFile() { firstLabel = false; }
virtual void setLabelName(string, vector<string>) {}
virtual void updateOutput(vector<double>) {}
protected:
MothurOut* m;
Utils util;
string filename, fileHeader;
bool firstLabel;
map<int, int> nseqsToRow; //maps number of seqs sampled to row in results
vector< vector<double> > results; //results[0] is the first row in output file. can contain multiple labels is 0.01 0.03
/*
numsampled 0.01 0.03
1.000000 1.000000 1.00000 - results[0]
100.000000 47.000000 30.00000 - results[1]
....
*/
void printFile();
};
/***********************************************************************/
class ThreeColumnFile : public FileOutput {
public:
ThreeColumnFile(string n) : FileOutput(n) { }
~ThreeColumnFile() = default;
void setLabelName(string);
void updateOutput(int, vector<double>);
private:
};
/***********************************************************************/
class OneColumnFile : public FileOutput {
public:
OneColumnFile(string n) : FileOutput(n) { }
~OneColumnFile() = default;
void setLabelName(string);
void updateOutput(int, vector<double>);
private:
};
/***********************************************************************/
class SharedOneColumnFile : public FileOutput {
public:
SharedOneColumnFile(string n) : FileOutput(n) {}
~SharedOneColumnFile() = default;
void setLabelName(string);
void updateOutput(int, vector<double>);
private:
};
/***********************************************************************/
class SharedThreeColumnFile : public FileOutput {
public:
SharedThreeColumnFile(string n, string groups) : FileOutput(n), groupLabel(groups), numGroup(1) { }
~SharedThreeColumnFile() = default;
void setLabelName(string);
void updateOutput(int, vector<double>);
private:
int numGroup;
string groupLabel;
};
/***********************************************************************/
//used by parsimony, unifrac.weighted and unifrac.unweighted
class ColumnFile : public FileOutput {
public:
ColumnFile(string n, string i) : FileOutput(n) {}
~ColumnFile() = default;
void setLabelName(string, vector<string>);
void updateOutput(vector<double>);
private:
};
/***********************************************************************/
#endif
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