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#ifndef RAREFACT_H
#define RAREFACT_H
#include "rarefactioncurvedata.h"
#include "raredisplay.h"
#include "ordervector.hpp"
#include "sharedrabundvectors.hpp"
#include "mothur.h"
class Rarefact {
public:
Rarefact(OrderVector& o, vector<Display*> disp, set<int> en, int proc) :
numSeqs(o.getNumSeqs()), order(o), displays(disp), label(o.getLabel()), ends(en) { m = MothurOut::getInstance(); jumble = false; processors = proc; }
Rarefact(SharedRAbundVectors* shared, vector<Display*> disp, bool j, int proc) :
lookup(shared), displays(disp), jumble(j) { m = MothurOut::getInstance(); processors = proc; }
~Rarefact(){};
int getCurve(float, int);
int getSharedCurve(float, int);
private:
OrderVector order;
vector<Display*> displays;
int numSeqs, numGroupComb, processors;
string label;
set<int> ends;
void mergeVectors(SharedRAbundVector*, SharedRAbundVector*);
SharedRAbundVectors* lookup;
MothurOut* m;
bool jumble;
Utils util;
int driver(vector<Display*>&, int, int);
};
#endif
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