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#ifndef READMATRIX_HPP
#define READMATRIX_HPP
/*
* readmatrix.hpp
*
*
* Created by Pat Schloss on 8/13/08.
* Copyright 2008 Patrick D. Schloss. All rights reserved.
*
*/
#include "mothur.h"
#include "listvector.hpp"
#include "nameassignment.hpp"
#include "counttable.h"
#include "sparsedistancematrix.h"
#include "utils.hpp"
class ReadMatrix {
public:
ReadMatrix(){ DMatrix = new SparseDistanceMatrix(); m = MothurOut::getInstance(); }
virtual ~ReadMatrix() = default;
virtual int read(NameAssignment*){ return 1; }
virtual int read(CountTable*){ return 1; }
void setCutoff(float c) { cutoff = c; }
SparseDistanceMatrix* getDMatrix() { return DMatrix; }
ListVector* getListVector() { return list; }
int successOpen;
protected:
SparseDistanceMatrix* DMatrix;
ListVector* list;
float cutoff;
MothurOut* m;
bool sim;
Utils util;
};
#endif
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