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#ifndef TRIALSWAP2
#define TRIALSWAP2
/*
* trialswap2.h
* Mothur
*
* Created by Kathryn Iverson on June 27, 2011.
* Copyright 2011 Schloss Lab. All rights reserved.
*
*/
#include "mothurout.h"
#include "utils.hpp"
class TrialSwap2 {
public:
TrialSwap2(){ m = MothurOut::getInstance(); };
~TrialSwap2(){};
double calc_pvalue_lessthan (vector<double>, double);
double calc_pvalue_greaterthan (vector<double>, double);
int swap_checkerboards (vector<vector<int> > &, int, int);
int calc_combo (int, int, vector<vector<int> > &);
double calc_vratio (int, int, vector<int>, vector<int>);
int calc_checker (vector<vector<int> > &, vector<int>, int, int);
double calc_c_score (vector<vector<int> > &, vector<int>, int, int);
double get_zscore (double, double, double);
double getSD (int, vector<double>, double);
private:
MothurOut* m;
Utils util;
double t_test (double, int, double, vector<double>);
int print_matrix(vector<vector<int> > &, int, int);
};
#endif
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